Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F7L entry

There are 4 chains in PDB entry 5F7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 58ASN 459
B
 GLN 1VAL 121
C
 ALA 58PHE 460
D
 GLN 1HIS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5F7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 75Right-handed alpha
Helix 2
AA2
A
80 101Right-handed alpha
Helix 3
AA3
A
102 104Right-handed 310
Helix 4
AA4
A
149 170Right-handed alpha
Helix 5
AA5
A
198 203Right-handed alpha
Helix 6
AA6
A
258 277Right-handed alpha
Helix 7
AA7
A
301 327Right-handed alpha
Helix 8
AA8
A
350 376Right-handed alpha
Helix 9
AA9
A
377 380Right-handed 310
Helix 10
AB1
A
381 382Right-handed 310
Helix 11
AB2
A
383 391Right-handed alpha
Helix 12
AB3
A
425 439Right-handed alpha
Helix 13
AB4
A
440 459Right-handed alpha
Helix 14
AB5
B
73 75Right-handed 310
Helix 15
AB6
B
86 90Right-handed 310
Helix 16
AB7
B
101 103Right-handed 310
Helix 17
AB8
C
59 75Right-handed alpha
Helix 18
AB9
C
80 101Right-handed alpha
Helix 19
AC1
C
102 104Right-handed 310
Helix 20
AC2
C
149 170Right-handed alpha
Helix 21
AC3
C
198 203Right-handed alpha
Helix 22
AC4
C
258 277Right-handed alpha
Helix 23
AC5
C
301 327Right-handed alpha
Helix 24
AC6
C
350 376Right-handed alpha
Helix 25
AC7
C
377 380Right-handed 310
Helix 26
AC8
C
381 391Right-handed alpha
Helix 27
AC9
C
425 439Right-handed alpha
Helix 28
AD1
C
440 460Right-handed alpha
Helix 29
AD2
D
73 75Right-handed 310
Helix 30
AD3
D
86 90Right-handed 310
Helix 31
AD4
D
101 103Right-handed 310
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There are 10 sheets in PDB entry 5F7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
245 256anti-parallel
Strand 5
A
221 232anti-parallel
Strand 6
A
211 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
295 297anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
117 120parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
31 39anti-parallel
Strand 5
B
46 52anti-parallel
Strand 6
B
56 59anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
117 120parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
112 113anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 135first strand
Strand 2
C
119 127anti-parallel
Strand 3
C
180 190anti-parallel
Strand 4
C
245 256anti-parallel
Strand 5
C
221 232anti-parallel
Strand 6
C
211 218anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 281first strand
Strand 2
C
295 297anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
18 26anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
117 121parallel
Strand 3
D
91 99anti-parallel
Strand 4
D
31 39anti-parallel
Strand 5
D
46 52anti-parallel
Strand 6
D
56 59anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
117 121parallel
Strand 3
D
91 99anti-parallel
Strand 4
D
112 113anti-parallel
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