Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F7N entry

There are 4 chains in PDB entry 5F7N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 35	SER 462
B	GLU 34	SER 462
C	VAL 3	SER 115
D	VAL 3	HIS 117

There are 32 helices in PDB entry 5F7N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed alpha
Helix 2	AA2	A	43	54	Right-handed alpha
Helix 3	AA3	A	55	76	Right-handed alpha
Helix 4	AA4	A	80	101	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	150	170	Right-handed alpha
Helix 7	AA7	A	198	203	Right-handed alpha
Helix 8	AA8	A	258	277	Right-handed alpha
Helix 9	AA9	A	301	328	Right-handed alpha
Helix 10	AB1	A	350	376	Right-handed alpha
Helix 11	AB2	A	377	380	Right-handed 310
Helix 12	AB3	A	381	391	Right-handed alpha
Helix 13	AB4	A	425	439	Right-handed alpha
Helix 14	AB5	A	440	462	Right-handed alpha
Helix 15	AB6	B	35	43	Right-handed alpha
Helix 16	AB7	B	43	54	Right-handed alpha
Helix 17	AB8	B	55	76	Right-handed alpha
Helix 18	AB9	B	80	101	Right-handed alpha
Helix 19	AC1	B	102	104	Right-handed 310
Helix 20	AC2	B	150	170	Right-handed alpha
Helix 21	AC3	B	198	203	Right-handed alpha
Helix 22	AC4	B	258	277	Right-handed alpha
Helix 23	AC5	B	301	328	Right-handed alpha
Helix 24	AC6	B	350	376	Right-handed alpha
Helix 25	AC7	B	377	380	Right-handed 310
Helix 26	AC8	B	381	391	Right-handed alpha
Helix 27	AC9	B	425	439	Right-handed alpha
Helix 28	AD1	B	440	462	Right-handed alpha
Helix 29	AD2	C	26	31	Right-handed alpha
Helix 30	AD3	C	87	91	Right-handed 310
Helix 31	AD4	D	26	31	Right-handed alpha
Helix 32	AD5	D	87	91	Right-handed 310

There are 10 sheets in PDB entry 5F7N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	148	149	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	135	first strand
Strand 2	A	119	127	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	245	256	anti-parallel
Strand 5	A	223	232	anti-parallel
Strand 6	A	211	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	295	297	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	148	149	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	135	first strand
Strand 2	B	119	127	anti-parallel
Strand 3	B	180	190	anti-parallel
Strand 4	B	245	256	anti-parallel
Strand 5	B	222	232	anti-parallel
Strand 6	B	211	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	295	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	47	52	anti-parallel
Strand 6	C	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	109	113	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	47	52	anti-parallel
Strand 6	D	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F7N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7N