Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F7P entry

There are 2 chains in PDB entry 5F7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 83PHE 391
A
 ASP 14LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5F7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
119 134Right-handed alpha
Helix 2
AA2
E
173 178Right-handed alpha
Helix 3
AA3
E
192 203Right-handed alpha
Helix 4
AA4
E
241 245Right-handed 310
Helix 5
AA5
E
261 265Right-handed 310
Helix 6
AA6
E
268 276Right-handed alpha
Helix 7
AA7
E
291 301Right-handed alpha
Helix 8
AA8
E
303 329Right-handed alpha
Helix 9
AA9
E
337 345Right-handed 310
Helix 10
AB1
E
346 356Right-handed alpha
Helix 11
AB2
E
358 363Right-handed 310
Helix 12
AB3
E
376 391Right-handed alpha
Helix 13
AB4
A
15 28Right-handed alpha
Helix 14
AB5
A
32 38Right-handed alpha
Helix 15
AB6
A
42 56Right-handed alpha
Helix 16
AB7
A
122 135Right-handed alpha
Helix 17
AB8
A
173 180Right-handed alpha
Helix 18
AB9
A
192 204Right-handed alpha
Helix 19
AC1
A
205 208Right-handed 310
Helix 20
AC2
A
241 245Right-handed 310
Helix 21
AC3
A
261 265Right-handed 310
Helix 22
AC4
A
268 280Right-handed alpha
Helix 23
AC5
A
291 301Right-handed alpha
Helix 24
AC6
A
303 329Right-handed alpha
Helix 25
AC7
A
341 345Right-handed 310
Helix 26
AC8
A
346 355Right-handed alpha
Helix 27
AC9
A
357 362Right-handed alpha
Helix 28
AD1
A
375 388Right-handed alpha
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There are 7 sheets in PDB entry 5F7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
106 111first strand
Strand 2
E
96 100anti-parallel
Strand 3
E
85 89anti-parallel
Strand 4
E
146 150parallel
Strand 5
E
187 191parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 155first strand
Strand 2
E
160 164anti-parallel
Strand 3
E
169 172anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
222 225first strand
Strand 2
E
213 216anti-parallel
Strand 3
E
332 336parallel
Strand 4
E
367 370parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
59 61anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 113first strand
Strand 2
A
94 100anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
143 150parallel
Strand 5
A
187 191parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
169 172anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
332 338parallel
Strand 4
A
367 370parallel
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