Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F7Q entry

There are 5 chains in PDB entry 5F7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 3	GLU 397
E	ASP 2	GLU 397
F	A 2	T 30
J	ASP 2	GLU 397
K	A 2	T 4

There are 72 helices in PDB entry 5F7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	8	28	Right-handed alpha
Helix 2	AA2	C	31	40	Right-handed alpha
Helix 3	AA3	C	42	56	Right-handed alpha
Helix 4	AA4	C	119	135	Right-handed alpha
Helix 5	AA5	C	139	141	Right-handed 310
Helix 6	AA6	C	173	182	Right-handed alpha
Helix 7	AA7	C	192	204	Right-handed alpha
Helix 8	AA8	C	205	208	Right-handed 310
Helix 9	AA9	C	234	238	Right-handed 310
Helix 10	AB1	C	241	245	Right-handed 310
Helix 11	AB2	C	261	265	Right-handed 310
Helix 12	AB3	C	268	277	Right-handed alpha
Helix 13	AB4	C	291	301	Right-handed alpha
Helix 14	AB5	C	303	329	Right-handed alpha
Helix 15	AB6	C	341	345	Right-handed 310
Helix 16	AB7	C	346	355	Right-handed alpha
Helix 17	AB8	C	376	392	Right-handed alpha
Helix 18	AB9	E	8	28	Right-handed alpha
Helix 19	AC1	E	32	40	Right-handed alpha
Helix 20	AC2	E	42	57	Right-handed alpha
Helix 21	AC3	E	119	136	Right-handed alpha
Helix 22	AC4	E	139	141	Right-handed 310
Helix 23	AC5	E	173	180	Right-handed alpha
Helix 24	AC6	E	192	204	Right-handed alpha
Helix 25	AC7	E	205	208	Right-handed 310
Helix 26	AC8	E	234	238	Right-handed 310
Helix 27	AC9	E	241	245	Right-handed 310
Helix 28	AD1	E	261	265	Right-handed 310
Helix 29	AD2	E	268	279	Right-handed alpha
Helix 30	AD3	E	280	282	Right-handed 310
Helix 31	AD4	E	291	301	Right-handed alpha
Helix 32	AD5	E	303	329	Right-handed alpha
Helix 33	AD6	E	337	345	Right-handed 310
Helix 34	AD7	E	346	355	Right-handed alpha
Helix 35	AD8	E	357	362	Right-handed alpha
Helix 36	AD9	E	376	392	Right-handed alpha
Helix 37	AE1	J	8	28	Right-handed alpha
Helix 38	AE2	J	32	40	Right-handed alpha
Helix 39	AE3	J	42	57	Right-handed alpha
Helix 40	AE4	J	119	136	Right-handed alpha
Helix 41	AE5	J	139	141	Right-handed 310
Helix 42	AE6	J	173	180	Right-handed alpha
Helix 43	AE7	J	192	204	Right-handed alpha
Helix 44	AE8	J	205	208	Right-handed 310
Helix 45	AE9	J	234	238	Right-handed 310
Helix 46	AF1	J	241	245	Right-handed 310
Helix 47	AF2	J	261	265	Right-handed 310
Helix 48	AF3	J	268	279	Right-handed alpha
Helix 49	AF4	J	291	301	Right-handed alpha
Helix 50	AF5	J	303	329	Right-handed alpha
Helix 51	AF6	J	337	345	Right-handed 310
Helix 52	AF7	J	346	355	Right-handed alpha
Helix 53	AF8	J	357	362	Right-handed alpha
Helix 54	AF9	J	376	392	Right-handed alpha
Helix 55	AG1	L	8	28	Right-handed alpha
Helix 56	AG2	L	31	40	Right-handed alpha
Helix 57	AG3	L	42	57	Right-handed alpha
Helix 58	AG4	L	119	135	Right-handed alpha
Helix 59	AG5	L	139	141	Right-handed 310
Helix 60	AG6	L	173	182	Right-handed alpha
Helix 61	AG7	L	192	204	Right-handed alpha
Helix 62	AG8	L	205	208	Right-handed 310
Helix 63	AG9	L	234	238	Right-handed 310
Helix 64	AH1	L	241	245	Right-handed 310
Helix 65	AH2	L	261	265	Right-handed 310
Helix 66	AH3	L	268	277	Right-handed alpha
Helix 67	AH4	L	291	301	Right-handed alpha
Helix 68	AH5	L	303	329	Right-handed alpha
Helix 69	AH6	L	341	345	Right-handed 310
Helix 70	AH7	L	346	355	Right-handed alpha
Helix 71	AH8	L	357	362	Right-handed alpha
Helix 72	AH9	L	376	392	Right-handed alpha

There are 19 sheets in PDB entry 5F7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	74	78	anti-parallel
Strand 3	C	59	64	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	113	first strand
Strand 2	C	94	100	anti-parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	143	150	parallel
Strand 5	C	187	191	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	160	164	anti-parallel
Strand 3	C	169	172	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	221	227	anti-parallel
Strand 3	C	212	217	anti-parallel
Strand 4	C	332	337	parallel
Strand 5	C	367	370	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	396	397	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	74	78	anti-parallel
Strand 3	E	59	64	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	113	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	143	150	parallel
Strand 5	E	187	191	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	160	164	anti-parallel
Strand 3	E	169	172	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	231	first strand
Strand 2	E	221	227	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	332	336	parallel
Strand 5	E	367	370	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	4	first strand
Strand 2	J	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	31	first strand
Strand 2	J	74	78	anti-parallel
Strand 3	J	59	64	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	113	first strand
Strand 2	J	94	100	anti-parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	143	150	parallel
Strand 5	J	187	191	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	155	first strand
Strand 2	J	160	164	anti-parallel
Strand 3	J	169	172	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	230	231	first strand
Strand 2	J	221	227	anti-parallel
Strand 3	J	212	217	anti-parallel
Strand 4	J	332	336	parallel
Strand 5	J	367	370	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	4	first strand
Strand 2	L	396	397	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	74	78	anti-parallel
Strand 3	L	59	64	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	113	first strand
Strand 2	L	94	100	anti-parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	143	150	parallel
Strand 5	L	187	191	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	160	164	anti-parallel
Strand 3	L	169	172	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	230	231	first strand
Strand 2	L	221	227	anti-parallel
Strand 3	L	212	218	anti-parallel
Strand 4	L	332	338	parallel
Strand 5	L	367	370	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7Q