Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F7R entry

There are 2 chains in PDB entry 5F7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 83PHE 391
A
 GLY 83PHE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5F7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
119 135Right-handed alpha
Helix 2
AA2
E
173 182Right-handed alpha
Helix 3
AA3
E
192 204Right-handed alpha
Helix 4
AA4
E
241 245Right-handed 310
Helix 5
AA5
E
261 265Right-handed 310
Helix 6
AA6
E
268 279Right-handed alpha
Helix 7
AA7
E
291 301Right-handed alpha
Helix 8
AA8
E
303 329Right-handed alpha
Helix 9
AA9
E
337 345Right-handed 310
Helix 10
AB1
E
346 355Right-handed alpha
Helix 11
AB2
E
359 363Right-handed 310
Helix 12
AB3
E
376 391Right-handed alpha
Helix 13
AB4
A
119 136Right-handed alpha
Helix 14
AB5
A
139 141Right-handed 310
Helix 15
AB6
A
173 182Right-handed alpha
Helix 16
AB7
A
192 204Right-handed alpha
Helix 17
AB8
A
241 245Right-handed 310
Helix 18
AB9
A
261 265Right-handed 310
Helix 19
AC1
A
268 279Right-handed alpha
Helix 20
AC2
A
291 301Right-handed alpha
Helix 21
AC3
A
303 329Right-handed alpha
Helix 22
AC4
A
337 345Right-handed 310
Helix 23
AC5
A
346 355Right-handed alpha
Helix 24
AC6
A
359 363Right-handed 310
Helix 25
AC7
A
376 391Right-handed alpha
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There are 6 sheets in PDB entry 5F7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
106 113first strand
Strand 2
E
94 100anti-parallel
Strand 3
E
84 90anti-parallel
Strand 4
E
143 150parallel
Strand 5
E
187 191parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 155first strand
Strand 2
E
160 164anti-parallel
Strand 3
E
169 172anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
230 231first strand
Strand 2
E
222 227anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
332 336parallel
Strand 5
E
367 370parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 113first strand
Strand 2
A
94 100anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
143 150parallel
Strand 5
A
187 191parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
169 172anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
222 227anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
332 336parallel
Strand 5
A
367 370parallel
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