Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F7S entry

There are 2 chains in PDB entry 5F7S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 730
B	MET 1	ALA 580

There are 34 helices in PDB entry 5F7S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	207	Right-handed alpha
Helix 2	AA2	A	272	285	Right-handed alpha
Helix 3	AA3	A	291	295	Right-handed 310
Helix 4	AA4	A	306	321	Right-handed alpha
Helix 5	AA5	A	355	359	Right-handed 310
Helix 6	AA6	A	369	380	Right-handed alpha
Helix 7	AA7	A	399	413	Right-handed alpha
Helix 8	AA8	A	441	451	Right-handed alpha
Helix 9	AA9	A	452	458	Right-handed alpha
Helix 10	AB1	A	484	507	Right-handed alpha
Helix 11	AB2	A	521	525	Right-handed 310
Helix 12	AB3	A	536	552	Right-handed alpha
Helix 13	AB4	A	571	584	Right-handed alpha
Helix 14	AB5	A	605	614	Right-handed alpha
Helix 15	AB6	A	616	647	Right-handed alpha
Helix 16	AB7	A	654	659	Right-handed alpha
Helix 17	AB8	A	661	667	Right-handed 310
Helix 18	AB9	B	202	207	Right-handed alpha
Helix 19	AC1	B	272	285	Right-handed alpha
Helix 20	AC2	B	291	295	Right-handed 310
Helix 21	AC3	B	306	320	Right-handed alpha
Helix 22	AC4	B	355	359	Right-handed 310
Helix 23	AC5	B	369	380	Right-handed alpha
Helix 24	AC6	B	399	412	Right-handed alpha
Helix 25	AC7	B	441	451	Right-handed alpha
Helix 26	AC8	B	452	458	Right-handed alpha
Helix 27	AC9	B	484	507	Right-handed alpha
Helix 28	AD1	B	521	525	Right-handed 310
Helix 29	AD2	B	536	552	Right-handed alpha
Helix 30	AD3	B	571	584	Right-handed alpha
Helix 31	AD4	B	605	614	Right-handed alpha
Helix 32	AD5	B	616	647	Right-handed alpha
Helix 33	AD6	B	654	659	Right-handed alpha
Helix 34	AD7	B	661	667	Right-handed 310

There are 18 sheets in PDB entry 5F7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	20	21	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	105	113	anti-parallel
Strand 4	A	118	120	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	41	49	anti-parallel
Strand 3	A	105	113	anti-parallel
Strand 4	A	124	126	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	152	156	anti-parallel
Strand 3	A	159	168	anti-parallel
Strand 4	A	247	253	anti-parallel
Strand 5	A	236	240	anti-parallel
Strand 6	A	191	194	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	263	271	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	212	219	anti-parallel
Strand 5	A	174	179	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	326	329	parallel
Strand 3	A	383	388	parallel
Strand 4	A	463	466	parallel
Strand 5	A	513	515	parallel
Strand 6	A	527	529	parallel
Strand 7	A	558	561	parallel
Strand 8	A	587	589	parallel
Strand 9	A	297	300	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	671	673	anti-parallel
Strand 3	A	677	679	anti-parallel
Strand 4	A	725	728	anti-parallel
Strand 5	A	698	701	anti-parallel
Strand 6	A	707	709	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	694	first strand
Strand 2	A	712	717	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	31	37	anti-parallel
Strand 3	B	20	21	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	31	37	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	60	61	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	41	50	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	118	120	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	41	50	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	124	126	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	152	156	anti-parallel
Strand 3	B	159	168	anti-parallel
Strand 4	B	247	253	anti-parallel
Strand 5	B	236	240	anti-parallel
Strand 6	B	191	194	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	263	271	parallel
Strand 3	B	225	230	anti-parallel
Strand 4	B	212	219	anti-parallel
Strand 5	B	174	179	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	326	329	parallel
Strand 3	B	383	388	parallel
Strand 4	B	463	466	parallel
Strand 5	B	513	515	parallel
Strand 6	B	527	529	parallel
Strand 7	B	558	561	parallel
Strand 8	B	587	590	parallel
Strand 9	B	297	300	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	671	673	anti-parallel
Strand 3	B	677	679	anti-parallel
Strand 4	B	725	729	anti-parallel
Strand 5	B	698	701	anti-parallel
Strand 6	B	707	709	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	694	first strand
Strand 2	B	712	717	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F7S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7S