Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F7V entry

There is 1 chain in PDB entry 5F7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29LYS 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5F7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
69 83Right-handed alpha
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
154 161Right-handed alpha
Helix 8
AA8
A
170 182Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
196 206Right-handed alpha
Helix 11
AB2
A
223 239Right-handed alpha
Helix 12
AB3
A
245 250Right-handed alpha
Helix 13
AB4
A
253 260Right-handed alpha
Helix 14
AB5
A
272 277Right-handed alpha
Helix 15
AB6
A
311 325Right-handed alpha
Helix 16
AB7
A
325 335Right-handed alpha
Helix 17
AB8
A
344 354Right-handed alpha
Helix 18
AB9
A
360 366Right-handed alpha
Helix 19
AC1
A
378 395Right-handed alpha
Helix 20
AC2
A
399 416Right-handed alpha
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There are 4 sheets in PDB entry 5F7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
31 37parallel
Strand 3
A
89 93parallel
Strand 4
A
299 305anti-parallel
Strand 5
A
141 146anti-parallel
Strand 6
A
339 340anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
137 138anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
263 269parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
283 286anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
370 371parallel
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