Analysis of interatomic Contacts of Structural Units in PDB entry:
5F85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F85 entry

There are 2 chains in PDB entry 5F85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 42PRO 406
B
 GLY 48GLU 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5F85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 61Right-handed alpha
Helix 2
AA2
A
76 85Right-handed alpha
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
93 101Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
135 140Right-handed 310
Helix 8
AA8
A
183 187Right-handed 310
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
234 236Right-handed 310
Helix 12
AB3
A
237 247Right-handed alpha
Helix 13
AB4
A
263 268Right-handed 310
Helix 14
AB5
A
277 282Right-handed alpha
Helix 15
AB6
A
297 304Right-handed alpha
Helix 16
AB7
A
338 351Right-handed alpha
Helix 17
AB8
A
352 371Right-handed alpha
Helix 18
AB9
A
372 389Right-handed alpha
Helix 19
AC1
B
49 54Right-handed 310
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There are 5 sheets in PDB entry 5F85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
114 116anti-parallel
Strand 4
A
402 405anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
179 180parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
223 231parallel
Strand 3
A
284 290parallel
Strand 4
A
308 312parallel
Strand 5
A
331 333parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
69 72anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
84 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il