Analysis of interatomic Contacts of Structural Units in PDB entry:
5F87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F87 entry

There are 6 chains in PDB entry 5F87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 42	PRO 406
B	ASN 42	PRO 406
C	ASN 42	PRO 406
D	ASN 42	PRO 406
E	ASN 42	PRO 406
F	ASN 42	PRO 406

There are107 helices in PDB entry 5F87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	61	Right-handed alpha
Helix 2	AA2	A	76	85	Right-handed alpha
Helix 3	AA3	A	86	88	Right-handed 310
Helix 4	AA4	A	93	101	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	122	138	Right-handed alpha
Helix 7	AA7	A	183	187	Right-handed 310
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	218	222	Right-handed 310
Helix 10	AB1	A	234	236	Right-handed 310
Helix 11	AB2	A	237	247	Right-handed alpha
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	277	282	Right-handed alpha
Helix 14	AB5	A	297	304	Right-handed alpha
Helix 15	AB6	A	320	324	Right-handed 310
Helix 16	AB7	A	338	351	Right-handed alpha
Helix 17	AB8	A	352	371	Right-handed alpha
Helix 18	AB9	A	372	391	Right-handed alpha
Helix 19	AC1	B	43	61	Right-handed alpha
Helix 20	AC2	B	76	84	Right-handed alpha
Helix 21	AC3	B	85	88	Right-handed 310
Helix 22	AC4	B	93	101	Right-handed alpha
Helix 23	AC5	B	102	104	Right-handed 310
Helix 24	AC6	B	122	138	Right-handed alpha
Helix 25	AC7	B	183	187	Right-handed 310
Helix 26	AC8	B	202	217	Right-handed alpha
Helix 27	AC9	B	218	222	Right-handed 310
Helix 28	AD1	B	234	236	Right-handed 310
Helix 29	AD2	B	237	247	Right-handed alpha
Helix 30	AD3	B	263	268	Right-handed 310
Helix 31	AD4	B	279	282	Right-handed 310
Helix 32	AD5	B	297	304	Right-handed alpha
Helix 33	AD6	B	318	324	Right-handed 310
Helix 34	AD7	B	338	352	Right-handed alpha
Helix 35	AD8	B	352	371	Right-handed alpha
Helix 36	AD9	B	372	389	Right-handed alpha
Helix 37	AE1	C	43	61	Right-handed alpha
Helix 38	AE2	C	76	85	Right-handed alpha
Helix 39	AE3	C	86	88	Right-handed 310
Helix 40	AE4	C	93	101	Right-handed alpha
Helix 41	AE5	C	102	104	Right-handed 310
Helix 42	AE6	C	122	138	Right-handed alpha
Helix 43	AE7	C	183	187	Right-handed 310
Helix 44	AE8	C	202	217	Right-handed alpha
Helix 45	AE9	C	218	222	Right-handed 310
Helix 46	AF1	C	234	236	Right-handed 310
Helix 47	AF2	C	237	247	Right-handed alpha
Helix 48	AF3	C	263	268	Right-handed 310
Helix 49	AF4	C	277	282	Right-handed alpha
Helix 50	AF5	C	297	304	Right-handed alpha
Helix 51	AF6	C	338	351	Right-handed alpha
Helix 52	AF7	C	352	371	Right-handed alpha
Helix 53	AF8	C	372	389	Right-handed alpha
Helix 54	AF9	D	43	61	Right-handed alpha
Helix 55	AG1	D	76	84	Right-handed alpha
Helix 56	AG2	D	85	88	Right-handed 310
Helix 57	AG3	D	93	101	Right-handed alpha
Helix 58	AG4	D	102	104	Right-handed 310
Helix 59	AG5	D	122	138	Right-handed alpha
Helix 60	AG6	D	183	187	Right-handed 310
Helix 61	AG7	D	202	217	Right-handed alpha
Helix 62	AG8	D	218	222	Right-handed 310
Helix 63	AG9	D	234	236	Right-handed 310
Helix 64	AH1	D	237	247	Right-handed alpha
Helix 65	AH2	D	263	268	Right-handed 310
Helix 66	AH3	D	277	282	Right-handed alpha
Helix 67	AH4	D	297	304	Right-handed alpha
Helix 68	AH5	D	320	324	Right-handed 310
Helix 69	AH6	D	338	351	Right-handed alpha
Helix 70	AH7	D	352	371	Right-handed alpha
Helix 71	AH8	D	372	388	Right-handed alpha
Helix 72	AH9	D	389	391	Right-handed 310
Helix 73	AI1	E	43	61	Right-handed alpha
Helix 74	AI2	E	76	85	Right-handed alpha
Helix 75	AI3	E	86	88	Right-handed 310
Helix 76	AI4	E	93	101	Right-handed alpha
Helix 77	AI5	E	102	104	Right-handed 310
Helix 78	AI6	E	122	138	Right-handed alpha
Helix 79	AI7	E	183	187	Right-handed 310
Helix 80	AI8	E	202	217	Right-handed alpha
Helix 81	AI9	E	218	222	Right-handed 310
Helix 82	AJ1	E	234	236	Right-handed 310
Helix 83	AJ2	E	237	247	Right-handed alpha
Helix 84	AJ3	E	263	268	Right-handed 310
Helix 85	AJ4	E	277	282	Right-handed alpha
Helix 86	AJ5	E	297	304	Right-handed alpha
Helix 87	AJ6	E	320	324	Right-handed 310
Helix 88	AJ7	E	338	351	Right-handed alpha
Helix 89	AJ8	E	352	371	Right-handed alpha
Helix 90	AJ9	E	372	389	Right-handed alpha
Helix 91	AK1	F	43	61	Right-handed alpha
Helix 92	AK2	F	76	85	Right-handed alpha
Helix 93	AK3	F	86	88	Right-handed 310
Helix 94	AK4	F	93	101	Right-handed alpha
Helix 95	AK5	F	102	104	Right-handed 310
Helix 96	AK6	F	122	138	Right-handed alpha
Helix 97	AK7	F	183	187	Right-handed 310
Helix 98	AK8	F	202	217	Right-handed alpha
Helix 99	AK9	F	218	222	Right-handed 310
Helix 100	AL1	F	234	236	Right-handed 310
Helix 101	AL2	F	237	247	Right-handed alpha
Helix 102	AL3	F	263	268	Right-handed 310
Helix 103	AL4	F	277	282	Right-handed alpha
Helix 104	AL5	F	297	304	Right-handed alpha
Helix 105	AL6	F	338	351	Right-handed alpha
Helix 106	AL7	F	352	371	Right-handed alpha
Helix 107	AL8	F	372	389	Right-handed alpha

There are 18 sheets in PDB entry 5F87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	105	109	anti-parallel
Strand 3	A	114	116	anti-parallel
Strand 4	A	402	405	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	179	180	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	256	first strand
Strand 2	A	223	231	parallel
Strand 3	A	284	289	parallel
Strand 4	A	308	312	parallel
Strand 5	A	331	333	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	105	109	anti-parallel
Strand 3	B	114	116	anti-parallel
Strand 4	B	402	405	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	179	180	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	256	first strand
Strand 2	B	223	231	parallel
Strand 3	B	284	289	parallel
Strand 4	B	308	312	parallel
Strand 5	B	331	333	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	105	109	anti-parallel
Strand 3	C	114	116	anti-parallel
Strand 4	C	402	405	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	179	180	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	255	first strand
Strand 2	C	223	230	parallel
Strand 3	C	284	289	parallel
Strand 4	C	308	312	parallel
Strand 5	C	331	333	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	105	109	anti-parallel
Strand 3	D	114	116	anti-parallel
Strand 4	D	402	405	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	179	180	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	255	first strand
Strand 2	D	223	230	parallel
Strand 3	D	284	289	parallel
Strand 4	D	308	312	parallel
Strand 5	D	331	333	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	147	first strand
Strand 2	E	105	109	anti-parallel
Strand 3	E	114	116	anti-parallel
Strand 4	E	402	405	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	179	180	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	256	first strand
Strand 2	E	223	231	parallel
Strand 3	E	284	289	parallel
Strand 4	E	308	312	parallel
Strand 5	E	331	333	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	105	109	anti-parallel
Strand 3	F	114	116	anti-parallel
Strand 4	F	402	405	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	169	first strand
Strand 2	F	179	180	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	253	first strand
Strand 2	F	223	228	parallel
Strand 3	F	284	289	parallel
Strand 4	F	308	312	parallel
Strand 5	F	331	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F87

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F87