Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F8C entry

There are 6 chains in PDB entry 5F8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5HIS 301
A
 MET 303HIS 358
B
 HIS -6HIS 301
B
 MET 303HIS 356
C
 MET 5HIS 301
C
 MET 303HIS 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5F8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 34Right-handed alpha
Helix 2
AA2
A
35 42Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
58 72Right-handed alpha
Helix 5
AA5
A
87 92Right-handed alpha
Helix 6
AA6
A
93 94Right-handed 310
Helix 7
AA7
A
95 102Right-handed 310
Helix 8
AA8
A
103 108Right-handed alpha
Helix 9
AA9
A
108 115Right-handed alpha
Helix 10
AB1
A
116 127Right-handed alpha
Helix 11
AB2
A
131 134Right-handed 310
Helix 12
AB3
A
135 154Right-handed alpha
Helix 13
AB4
A
158 162Right-handed 310
Helix 14
AB5
A
164 172Right-handed alpha
Helix 15
AB6
A
183 193Right-handed alpha
Helix 16
AB7
A
204 218Right-handed alpha
Helix 17
AB8
A
253 264Right-handed alpha
Helix 18
AB9
A
281 286Right-handed alpha
Helix 19
AC1
A
290 301Right-handed alpha
Helix 20
AC2
A
301 309Right-handed alpha
Helix 21
AC3
A
319 330Right-handed alpha
Helix 22
AC4
B
7 34Right-handed alpha
Helix 23
AC5
B
35 42Right-handed alpha
Helix 24
AC6
B
47 56Right-handed alpha
Helix 25
AC7
B
58 72Right-handed alpha
Helix 26
AC8
B
87 92Right-handed alpha
Helix 27
AC9
B
93 94Right-handed 310
Helix 28
AD1
B
95 102Right-handed 310
Helix 29
AD2
B
105 107Right-handed 310
Helix 30
AD3
B
108 115Right-handed alpha
Helix 31
AD4
B
116 127Right-handed alpha
Helix 32
AD5
B
131 134Right-handed 310
Helix 33
AD6
B
135 154Right-handed alpha
Helix 34
AD7
B
158 162Right-handed 310
Helix 35
AD8
B
164 172Right-handed alpha
Helix 36
AD9
B
183 193Right-handed alpha
Helix 37
AE1
B
204 218Right-handed alpha
Helix 38
AE2
B
253 264Right-handed alpha
Helix 39
AE3
B
281 286Right-handed alpha
Helix 40
AE4
B
290 301Right-handed alpha
Helix 41
AE5
B
301 309Right-handed alpha
Helix 42
AE6
B
319 330Right-handed alpha
Helix 43
AE7
C
7 35Right-handed alpha
Helix 44
AE8
C
35 42Right-handed alpha
Helix 45
AE9
C
47 56Right-handed alpha
Helix 46
AF1
C
58 72Right-handed alpha
Helix 47
AF2
C
87 92Right-handed alpha
Helix 48
AF3
C
93 94Right-handed 310
Helix 49
AF4
C
95 102Right-handed 310
Helix 50
AF5
C
103 115Right-handed alpha
Helix 51
AF6
C
116 127Right-handed alpha
Helix 52
AF7
C
131 134Right-handed 310
Helix 53
AF8
C
135 154Right-handed alpha
Helix 54
AF9
C
158 162Right-handed 310
Helix 55
AG1
C
164 172Right-handed alpha
Helix 56
AG2
C
183 193Right-handed alpha
Helix 57
AG3
C
204 219Right-handed alpha
Helix 58
AG4
C
229 233Right-handed 310
Helix 59
AG5
C
247 251Right-handed 310
Helix 60
AG6
C
253 264Right-handed alpha
Helix 61
AG7
C
281 286Right-handed alpha
Helix 62
AG8
C
290 301Right-handed alpha
Helix 63
AG9
C
301 308Right-handed alpha
Helix 64
AH1
C
319 330Right-handed alpha
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There are 6 sheets in PDB entry 5F8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
83 85anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
197 202parallel
Strand 3
A
174 178parallel
Strand 4
A
239 245parallel
Strand 5
A
265 276parallel
Strand 6
A
346 352anti-parallel
Strand 7
A
334 338anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
83 85anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
197 202parallel
Strand 3
B
174 178parallel
Strand 4
B
239 245parallel
Strand 5
B
265 276parallel
Strand 6
B
346 352anti-parallel
Strand 7
B
334 338anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
83 85anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 227first strand
Strand 2
C
197 202parallel
Strand 3
C
174 178parallel
Strand 4
C
239 245parallel
Strand 5
C
265 276parallel
Strand 6
C
346 352anti-parallel
Strand 7
C
334 338anti-parallel
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