Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F8E entry

There are 6 chains in PDB entry 5F8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5HIS 301
A
 MET 303HIS 357
B
 GLU 6HIS 301
B
 MET 303GLU 355
C
 HIS 4HIS 301
C
 MET 303HIS 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5F8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 34Right-handed alpha
Helix 2
AA2
A
35 42Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
58 72Right-handed alpha
Helix 5
AA5
A
87 92Right-handed alpha
Helix 6
AA6
A
93 94Right-handed 310
Helix 7
AA7
A
95 102Right-handed 310
Helix 8
AA8
A
103 108Right-handed alpha
Helix 9
AA9
A
108 115Right-handed alpha
Helix 10
AB1
A
116 127Right-handed alpha
Helix 11
AB2
A
131 134Right-handed 310
Helix 12
AB3
A
135 154Right-handed alpha
Helix 13
AB4
A
158 162Right-handed 310
Helix 14
AB5
A
164 172Right-handed alpha
Helix 15
AB6
A
183 193Right-handed alpha
Helix 16
AB7
A
204 218Right-handed alpha
Helix 17
AB8
A
229 233Right-handed 310
Helix 18
AB9
A
253 264Right-handed alpha
Helix 19
AC1
A
281 286Right-handed alpha
Helix 20
AC2
A
290 301Right-handed alpha
Helix 21
AC3
A
301 309Right-handed alpha
Helix 22
AC4
A
319 331Right-handed alpha
Helix 23
AC5
B
7 34Right-handed alpha
Helix 24
AC6
B
35 42Right-handed alpha
Helix 25
AC7
B
47 56Right-handed alpha
Helix 26
AC8
B
58 72Right-handed alpha
Helix 27
AC9
B
87 92Right-handed alpha
Helix 28
AD1
B
95 102Right-handed 310
Helix 29
AD2
B
107 115Right-handed alpha
Helix 30
AD3
B
116 127Right-handed alpha
Helix 31
AD4
B
131 136Right-handed 310
Helix 32
AD5
B
137 154Right-handed alpha
Helix 33
AD6
B
158 162Right-handed 310
Helix 34
AD7
B
164 172Right-handed alpha
Helix 35
AD8
B
183 193Right-handed alpha
Helix 36
AD9
B
204 219Right-handed alpha
Helix 37
AE1
B
253 264Right-handed alpha
Helix 38
AE2
B
282 286Right-handed 310
Helix 39
AE3
B
290 301Right-handed alpha
Helix 40
AE4
B
301 308Right-handed alpha
Helix 41
AE5
B
319 331Right-handed alpha
Helix 42
AE6
C
7 34Right-handed alpha
Helix 43
AE7
C
35 42Right-handed alpha
Helix 44
AE8
C
47 56Right-handed alpha
Helix 45
AE9
C
58 72Right-handed alpha
Helix 46
AF1
C
87 92Right-handed alpha
Helix 47
AF2
C
93 94Right-handed 310
Helix 48
AF3
C
95 102Right-handed 310
Helix 49
AF4
C
105 107Right-handed 310
Helix 50
AF5
C
108 115Right-handed alpha
Helix 51
AF6
C
116 127Right-handed alpha
Helix 52
AF7
C
131 134Right-handed 310
Helix 53
AF8
C
135 154Right-handed alpha
Helix 54
AF9
C
158 162Right-handed 310
Helix 55
AG1
C
164 172Right-handed alpha
Helix 56
AG2
C
183 193Right-handed alpha
Helix 57
AG3
C
204 219Right-handed alpha
Helix 58
AG4
C
253 264Right-handed alpha
Helix 59
AG5
C
281 285Right-handed 310
Helix 60
AG6
C
290 300Right-handed alpha
Helix 61
AG7
C
301 308Right-handed alpha
Helix 62
AG8
C
319 330Right-handed alpha
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There are 6 sheets in PDB entry 5F8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
83 85anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
197 202parallel
Strand 3
A
174 178parallel
Strand 4
A
239 245parallel
Strand 5
A
265 276parallel
Strand 6
A
346 352anti-parallel
Strand 7
A
334 338anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
83 85anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
197 202parallel
Strand 3
B
174 178parallel
Strand 4
B
239 245parallel
Strand 5
B
265 276parallel
Strand 6
B
343 352anti-parallel
Strand 7
B
334 340anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
83 85anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 227first strand
Strand 2
C
197 202parallel
Strand 3
C
174 178parallel
Strand 4
C
239 245parallel
Strand 5
C
265 276parallel
Strand 6
C
346 352anti-parallel
Strand 7
C
334 338anti-parallel
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