Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F8M entry

There are 3 chains in PDB entry 5F8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 462
B
 C 599 C 610
C
 A 693 U 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5F8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed alpha
Helix 2
AA2
A
53 59Right-handed alpha
Helix 3
AA3
A
71 87Right-handed alpha
Helix 4
AA4
A
96 103Right-handed alpha
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
138 149Right-handed alpha
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
180 201Right-handed alpha
Helix 10
AB1
A
213 225Right-handed alpha
Helix 11
AB2
A
236 241Right-handed alpha
Helix 12
AB3
A
242 256Right-handed alpha
Helix 13
AB4
A
259 264Right-handed alpha
Helix 14
AB5
A
266 270Right-handed alpha
Helix 15
AB6
A
293 314Right-handed alpha
Helix 16
AB7
A
318 322Right-handed 310
Helix 17
AB8
A
340 351Right-handed alpha
Helix 18
AB9
A
394 403Right-handed alpha
Helix 19
AC1
A
407 409Right-handed 310
Helix 20
AC2
A
410 423Right-handed alpha
Helix 21
AC3
A
425 439Right-handed alpha
Helix 22
AC4
A
440 445Right-handed alpha
Helix 23
AC5
A
450 460Right-handed alpha
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There are 5 sheets in PDB entry 5F8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
154 158parallel
Strand 5
A
175 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
404 405anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
162 164anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
355 356anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
389 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il