Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F8U entry

There are 2 chains in PDB entry 5F8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 39PHE 359
A
 GLN 39PHE 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5F8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
39 68Right-handed alpha
Helix 2
AA2
B
69 73Right-handed 310
Helix 3
AA3
B
74 93Right-handed alpha
Helix 4
AA4
B
93 105Right-handed alpha
Helix 5
AA5
B
109 145Right-handed alpha
Helix 6
AA6
B
145 153Right-handed alpha
Helix 7
AA7
B
154 179Right-handed alpha
Helix 8
AA8
B
186 195Right-handed alpha
Helix 9
AA9
B
204 216Right-handed alpha
Helix 10
AB1
B
216 238Right-handed alpha
Helix 11
AB2
B
285 316Right-handed alpha
Helix 12
AB3
B
317 320Right-handed 310
Helix 13
AB4
B
321 344Right-handed alpha
Helix 14
AB5
B
346 357Right-handed alpha
Helix 15
AB6
A
40 68Right-handed alpha
Helix 16
AB7
A
69 73Right-handed 310
Helix 17
AB8
A
74 93Right-handed alpha
Helix 18
AB9
A
93 105Right-handed alpha
Helix 19
AC1
A
109 145Right-handed alpha
Helix 20
AC2
A
145 153Right-handed alpha
Helix 21
AC3
A
154 179Right-handed alpha
Helix 22
AC4
A
186 195Right-handed alpha
Helix 23
AC5
A
204 216Right-handed alpha
Helix 24
AC6
A
216 238Right-handed alpha
Helix 25
AC7
A
285 316Right-handed alpha
Helix 26
AC8
A
317 320Right-handed 310
Helix 27
AC9
A
321 344Right-handed alpha
Helix 28
AD1
A
346 357Right-handed alpha
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There are no sheets in PDB entry 5F8U
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il