Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F8V entry

There are 16 chains in PDB entry 5F8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	GLN 201
A	ASN 203	PHE 371
E	ARG 5	GLN 201
E	ASN 203	TRP 368
B	ARG 5	GLN 201
B	ASN 203	PHE 371
C	ARG 5	GLN 201
C	ASN 203	GLU 367
D	ARG 5	GLN 201
D	ASN 203	PHE 371
F	ARG 5	GLN 201
F	ASN 203	TRP 368
G	ARG 5	GLN 201
G	ASN 203	PHE 371
H	ARG 5	GLN 201
H	ASN 203	GLY 370

There are117 helices in PDB entry 5F8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	27	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	45	64	Right-handed alpha
Helix 4	AA4	A	77	90	Right-handed alpha
Helix 5	AA5	A	102	116	Right-handed alpha
Helix 6	AA6	A	138	142	Right-handed 310
Helix 7	AA7	A	189	191	Right-handed 310
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	228	231	Right-handed 310
Helix 10	AB1	A	232	239	Right-handed alpha
Helix 11	AB2	A	247	264	Right-handed alpha
Helix 12	AB3	A	266	287	Right-handed alpha
Helix 13	AB4	A	296	300	Right-handed 310
Helix 14	AB5	A	317	330	Right-handed alpha
Helix 15	AB6	A	354	368	Right-handed alpha
Helix 16	AB7	E	17	28	Right-handed alpha
Helix 17	AB8	E	37	41	Right-handed 310
Helix 18	AB9	E	45	64	Right-handed alpha
Helix 19	AC1	E	77	90	Right-handed alpha
Helix 20	AC2	E	102	116	Right-handed alpha
Helix 21	AC3	E	138	142	Right-handed 310
Helix 22	AC4	E	189	191	Right-handed 310
Helix 23	AC5	E	217	221	Right-handed 310
Helix 24	AC6	E	228	231	Right-handed 310
Helix 25	AC7	E	232	239	Right-handed alpha
Helix 26	AC8	E	247	264	Right-handed alpha
Helix 27	AC9	E	265	287	Right-handed alpha
Helix 28	AD1	E	296	300	Right-handed 310
Helix 29	AD2	E	317	331	Right-handed alpha
Helix 30	AD3	E	354	367	Right-handed alpha
Helix 31	AD4	B	17	27	Right-handed alpha
Helix 32	AD5	B	37	41	Right-handed 310
Helix 33	AD6	B	45	64	Right-handed alpha
Helix 34	AD7	B	77	90	Right-handed alpha
Helix 35	AD8	B	102	116	Right-handed alpha
Helix 36	AD9	B	138	142	Right-handed 310
Helix 37	AE1	B	189	191	Right-handed 310
Helix 38	AE2	B	217	219	Right-handed 310
Helix 39	AE3	B	228	231	Right-handed 310
Helix 40	AE4	B	232	239	Right-handed alpha
Helix 41	AE5	B	247	264	Right-handed alpha
Helix 42	AE6	B	266	288	Right-handed alpha
Helix 43	AE7	B	317	330	Right-handed alpha
Helix 44	AE8	B	354	368	Right-handed alpha
Helix 45	AE9	C	17	28	Right-handed alpha
Helix 46	AF1	C	37	41	Right-handed 310
Helix 47	AF2	C	45	64	Right-handed alpha
Helix 48	AF3	C	77	90	Right-handed alpha
Helix 49	AF4	C	102	116	Right-handed alpha
Helix 50	AF5	C	138	142	Right-handed 310
Helix 51	AF6	C	189	191	Right-handed 310
Helix 52	AF7	C	216	220	Right-handed alpha
Helix 53	AF8	C	228	231	Right-handed 310
Helix 54	AF9	C	232	239	Right-handed alpha
Helix 55	AG1	C	247	264	Right-handed alpha
Helix 56	AG2	C	266	288	Right-handed alpha
Helix 57	AG3	C	317	331	Right-handed alpha
Helix 58	AG4	C	354	367	Right-handed alpha
Helix 59	AG5	D	17	27	Right-handed alpha
Helix 60	AG6	D	30	34	Right-handed 310
Helix 61	AG7	D	45	64	Right-handed alpha
Helix 62	AG8	D	77	90	Right-handed alpha
Helix 63	AG9	D	102	116	Right-handed alpha
Helix 64	AH1	D	138	142	Right-handed 310
Helix 65	AH2	D	189	191	Right-handed 310
Helix 66	AH3	D	216	220	Right-handed alpha
Helix 67	AH4	D	228	231	Right-handed 310
Helix 68	AH5	D	232	239	Right-handed alpha
Helix 69	AH6	D	247	264	Right-handed alpha
Helix 70	AH7	D	265	288	Right-handed alpha
Helix 71	AH8	D	317	331	Right-handed alpha
Helix 72	AH9	D	354	368	Right-handed alpha
Helix 73	AI1	F	17	27	Right-handed alpha
Helix 74	AI2	F	37	41	Right-handed 310
Helix 75	AI3	F	45	64	Right-handed alpha
Helix 76	AI4	F	77	90	Right-handed alpha
Helix 77	AI5	F	102	116	Right-handed alpha
Helix 78	AI6	F	138	142	Right-handed 310
Helix 79	AI7	F	189	191	Right-handed 310
Helix 80	AI8	F	216	220	Right-handed alpha
Helix 81	AI9	F	228	231	Right-handed 310
Helix 82	AJ1	F	232	239	Right-handed alpha
Helix 83	AJ2	F	247	265	Right-handed alpha
Helix 84	AJ3	F	266	288	Right-handed alpha
Helix 85	AJ4	F	328	331	Right-handed 310
Helix 86	AJ5	F	354	368	Right-handed alpha
Helix 87	AJ6	G	17	27	Right-handed alpha
Helix 88	AJ7	G	30	34	Right-handed 310
Helix 89	AJ8	G	37	41	Right-handed 310
Helix 90	AJ9	G	45	64	Right-handed alpha
Helix 91	AK1	G	77	90	Right-handed alpha
Helix 92	AK2	G	102	116	Right-handed alpha
Helix 93	AK3	G	138	142	Right-handed 310
Helix 94	AK4	G	189	191	Right-handed 310
Helix 95	AK5	G	217	221	Right-handed 310
Helix 96	AK6	G	228	231	Right-handed 310
Helix 97	AK7	G	232	239	Right-handed alpha
Helix 98	AK8	G	247	264	Right-handed alpha
Helix 99	AK9	G	266	288	Right-handed alpha
Helix 100	AL1	G	296	300	Right-handed 310
Helix 101	AL2	G	317	331	Right-handed alpha
Helix 102	AL3	G	354	368	Right-handed alpha
Helix 103	AL4	H	17	27	Right-handed alpha
Helix 104	AL5	H	37	41	Right-handed 310
Helix 105	AL6	H	45	64	Right-handed alpha
Helix 106	AL7	H	77	90	Right-handed alpha
Helix 107	AL8	H	102	116	Right-handed alpha
Helix 108	AL9	H	138	142	Right-handed 310
Helix 109	AM1	H	189	191	Right-handed 310
Helix 110	AM2	H	216	220	Right-handed alpha
Helix 111	AM3	H	228	231	Right-handed 310
Helix 112	AM4	H	232	239	Right-handed alpha
Helix 113	AM5	H	247	264	Right-handed alpha
Helix 114	AM6	H	265	288	Right-handed alpha
Helix 115	AM7	H	296	300	Right-handed 310
Helix 116	AM8	H	317	331	Right-handed alpha
Helix 117	AM9	H	354	368	Right-handed alpha

There are 32 sheets in PDB entry 5F8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	333	334	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	174	177	parallel
Strand 5	A	148	154	parallel
Strand 6	A	95	98	parallel
Strand 7	A	121	124	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	345	348	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	333	334	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	75	first strand
Strand 2	E	209	215	anti-parallel
Strand 3	E	193	199	anti-parallel
Strand 4	E	174	177	parallel
Strand 5	E	148	154	parallel
Strand 6	E	95	99	parallel
Strand 7	E	121	124	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	307	first strand
Strand 2	E	345	348	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	333	334	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	75	first strand
Strand 2	B	209	215	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	174	177	parallel
Strand 5	B	148	154	parallel
Strand 6	B	95	98	parallel
Strand 7	B	121	124	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	162	163	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	345	348	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	333	334	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	75	first strand
Strand 2	C	209	215	anti-parallel
Strand 3	C	193	199	anti-parallel
Strand 4	C	174	177	parallel
Strand 5	C	148	154	parallel
Strand 6	C	95	98	parallel
Strand 7	C	121	124	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	162	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	345	348	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	333	334	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	75	first strand
Strand 2	D	209	215	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	174	177	parallel
Strand 5	D	148	154	parallel
Strand 6	D	95	98	parallel
Strand 7	D	121	124	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	162	163	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	345	348	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	333	334	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	75	first strand
Strand 2	F	209	215	anti-parallel
Strand 3	F	193	199	anti-parallel
Strand 4	F	174	177	parallel
Strand 5	F	148	154	parallel
Strand 6	F	95	98	parallel
Strand 7	F	121	124	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	162	163	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	306	first strand
Strand 2	F	346	348	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	333	334	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	75	first strand
Strand 2	G	209	215	anti-parallel
Strand 3	G	193	199	anti-parallel
Strand 4	G	174	177	parallel
Strand 5	G	148	154	parallel
Strand 6	G	95	98	parallel
Strand 7	G	121	124	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	157	first strand
Strand 2	G	162	163	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	307	first strand
Strand 2	G	345	348	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	333	334	parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	75	first strand
Strand 2	H	209	215	anti-parallel
Strand 3	H	193	199	anti-parallel
Strand 4	H	174	177	parallel
Strand 5	H	148	154	parallel
Strand 6	H	95	98	parallel
Strand 7	H	121	124	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	157	first strand
Strand 2	H	162	163	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	307	first strand
Strand 2	H	345	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F8V