Analysis of interatomic Contacts of Structural Units in PDB entry:
5F97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F97 entry

There are 4 chains in PDB entry 5F97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 32	HIS 466
B	ASN 32	HIS 466
C	ASN 32	HIS 466
D	ASN 32	TYR 83

There are 66 helices in PDB entry 5F97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed alpha
Helix 2	AA2	A	43	54	Right-handed alpha
Helix 3	AA3	A	55	75	Right-handed alpha
Helix 4	AA4	A	80	101	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	109	113	Right-handed 310
Helix 7	AA7	A	149	170	Right-handed alpha
Helix 8	AA8	A	261	280	Right-handed alpha
Helix 9	AA9	A	304	323	Right-handed alpha
Helix 10	AB1	A	323	330	Right-handed alpha
Helix 11	AB2	A	353	379	Right-handed alpha
Helix 12	AB3	A	380	383	Right-handed 310
Helix 13	AB4	A	384	394	Right-handed alpha
Helix 14	AB5	A	428	442	Right-handed alpha
Helix 15	AB6	A	443	465	Right-handed alpha
Helix 16	AB7	B	35	43	Right-handed alpha
Helix 17	AB8	B	43	54	Right-handed alpha
Helix 18	AB9	B	55	75	Right-handed alpha
Helix 19	AC1	B	80	101	Right-handed alpha
Helix 20	AC2	B	102	104	Right-handed 310
Helix 21	AC3	B	109	113	Right-handed 310
Helix 22	AC4	B	149	170	Right-handed alpha
Helix 23	AC5	B	261	280	Right-handed alpha
Helix 24	AC6	B	304	330	Right-handed alpha
Helix 25	AC7	B	353	379	Right-handed alpha
Helix 26	AC8	B	380	383	Right-handed 310
Helix 27	AC9	B	384	394	Right-handed alpha
Helix 28	AD1	B	428	442	Right-handed alpha
Helix 29	AD2	B	443	464	Right-handed alpha
Helix 30	AD3	C	35	43	Right-handed alpha
Helix 31	AD4	C	43	54	Right-handed alpha
Helix 32	AD5	C	55	75	Right-handed alpha
Helix 33	AD6	C	80	101	Right-handed alpha
Helix 34	AD7	C	102	104	Right-handed 310
Helix 35	AD8	C	109	113	Right-handed 310
Helix 36	AD9	C	150	170	Right-handed alpha
Helix 37	AE1	C	261	280	Right-handed alpha
Helix 38	AE2	C	304	331	Right-handed alpha
Helix 39	AE3	C	353	379	Right-handed alpha
Helix 40	AE4	C	380	383	Right-handed 310
Helix 41	AE5	C	384	394	Right-handed alpha
Helix 42	AE6	C	428	442	Right-handed alpha
Helix 43	AE7	C	443	465	Right-handed alpha
Helix 44	AE8	D	36	43	Right-handed alpha
Helix 45	AE9	D	43	54	Right-handed alpha
Helix 46	AF1	D	55	76	Right-handed alpha
Helix 47	AF2	D	80	101	Right-handed alpha
Helix 48	AF3	D	102	104	Right-handed 310
Helix 49	AF4	D	149	170	Right-handed alpha
Helix 50	AF5	D	261	280	Right-handed alpha
Helix 51	AF6	D	304	331	Right-handed alpha
Helix 52	AF7	D	353	379	Right-handed alpha
Helix 53	AF8	D	380	383	Right-handed 310
Helix 54	AF9	D	384	394	Right-handed alpha
Helix 55	AG1	D	428	442	Right-handed alpha
Helix 56	AG2	D	443	464	Right-handed alpha
Helix 57	AG3	E	26	31	Right-handed alpha
Helix 58	AG4	E	62	65	Right-handed 310
Helix 59	AG5	E	87	91	Right-handed 310
Helix 60	AG6	F	26	31	Right-handed alpha
Helix 61	AG7	F	62	65	Right-handed 310
Helix 62	AG8	F	87	91	Right-handed 310
Helix 63	AG9	G	26	31	Right-handed alpha
Helix 64	AH1	G	87	91	Right-handed 310
Helix 65	AH2	H	26	31	Right-handed alpha
Helix 66	AH3	H	87	91	Right-handed 310

There are 18 sheets in PDB entry 5F97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	119	123	anti-parallel
Strand 3	A	180	191	anti-parallel
Strand 4	A	248	259	anti-parallel
Strand 5	A	224	235	anti-parallel
Strand 6	A	214	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	119	123	anti-parallel
Strand 3	B	180	191	anti-parallel
Strand 4	B	248	259	anti-parallel
Strand 5	B	224	235	anti-parallel
Strand 6	B	214	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	148	149	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	135	first strand
Strand 2	C	119	127	anti-parallel
Strand 3	C	180	191	anti-parallel
Strand 4	C	248	259	anti-parallel
Strand 5	C	224	235	anti-parallel
Strand 6	C	217	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	119	127	anti-parallel
Strand 3	D	180	191	anti-parallel
Strand 4	D	248	259	anti-parallel
Strand 5	D	224	231	anti-parallel
Strand 6	D	215	221	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	119	127	anti-parallel
Strand 3	D	180	191	anti-parallel
Strand 4	D	248	259	anti-parallel
Strand 5	D	234	235	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	13	first strand
Strand 2	E	109	113	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	47	52	anti-parallel
Strand 6	E	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	109	113	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	47	52	anti-parallel
Strand 6	F	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	109	113	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	47	52	anti-parallel
Strand 6	G	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	109	113	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	47	52	anti-parallel
Strand 6	H	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F97

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F97