Analysis of interatomic Contacts of Structural Units in PDB entry:
5F98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F98 entry

There are 12 chains in PDB entry 5F98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 240	GLU 922
B	G 2	C 25
C	PRO 240	GLU 922
D	G 2	C 25
E	LYS 242	GLU 922
F	G 2	C 25
G	PRO 240	GLU 922
H	G 2	C 25
I	PRO 240	GLU 922
J	G 2	C 25
K	PHE 241	GLU 922
L	G 2	C 25

There are144 helices in PDB entry 5F98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	244	252	Right-handed alpha
Helix 2	AA2	A	253	257	Right-handed 310
Helix 3	AA3	A	269	284	Right-handed alpha
Helix 4	AA4	A	299	315	Right-handed alpha
Helix 5	AA5	A	325	329	Right-handed 310
Helix 6	AA6	A	333	340	Right-handed alpha
Helix 7	AA7	A	347	357	Right-handed alpha
Helix 8	AA8	A	362	366	Right-handed 310
Helix 9	AA9	A	374	377	Right-handed 310
Helix 10	AB1	A	381	395	Right-handed alpha
Helix 11	AB2	A	419	434	Right-handed alpha
Helix 12	AB3	A	445	450	Right-handed alpha
Helix 13	AB4	A	470	488	Right-handed alpha
Helix 14	AB5	A	506	520	Right-handed alpha
Helix 15	AB6	A	530	558	Right-handed alpha
Helix 16	AB7	A	559	577	Right-handed alpha
Helix 17	AB8	A	583	593	Right-handed alpha
Helix 18	AB9	A	593	601	Right-handed alpha
Helix 19	AC1	A	608	623	Right-handed alpha
Helix 20	AC2	A	636	649	Right-handed alpha
Helix 21	AC3	A	650	654	Right-handed 310
Helix 22	AC4	A	720	728	Right-handed alpha
Helix 23	AC5	A	744	769	Right-handed alpha
Helix 24	AC6	A	772	789	Right-handed alpha
Helix 25	AC7	A	834	839	Right-handed alpha
Helix 26	AC8	A	907	911	Right-handed 310
Helix 27	AC9	C	244	256	Right-handed alpha
Helix 28	AD1	C	269	283	Right-handed alpha
Helix 29	AD2	C	299	315	Right-handed alpha
Helix 30	AD3	C	325	329	Right-handed 310
Helix 31	AD4	C	333	340	Right-handed alpha
Helix 32	AD5	C	347	358	Right-handed alpha
Helix 33	AD6	C	362	366	Right-handed 310
Helix 34	AD7	C	374	377	Right-handed 310
Helix 35	AD8	C	381	395	Right-handed alpha
Helix 36	AD9	C	419	434	Right-handed alpha
Helix 37	AE1	C	445	450	Right-handed alpha
Helix 38	AE2	C	474	488	Right-handed alpha
Helix 39	AE3	C	506	521	Right-handed alpha
Helix 40	AE4	C	528	558	Right-handed alpha
Helix 41	AE5	C	559	577	Right-handed alpha
Helix 42	AE6	C	580	593	Right-handed alpha
Helix 43	AE7	C	599	603	Right-handed 310
Helix 44	AE8	C	608	625	Right-handed alpha
Helix 45	AE9	C	637	649	Right-handed alpha
Helix 46	AF1	C	650	654	Right-handed 310
Helix 47	AF2	C	720	728	Right-handed alpha
Helix 48	AF3	C	729	732	Right-handed 310
Helix 49	AF4	C	744	769	Right-handed alpha
Helix 50	AF5	C	772	795	Right-handed alpha
Helix 51	AF6	C	837	840	Right-handed 310
Helix 52	AF7	E	244	252	Right-handed alpha
Helix 53	AF8	E	253	257	Right-handed 310
Helix 54	AF9	E	269	283	Right-handed alpha
Helix 55	AG1	E	299	315	Right-handed alpha
Helix 56	AG2	E	333	340	Right-handed alpha
Helix 57	AG3	E	347	357	Right-handed alpha
Helix 58	AG4	E	362	366	Right-handed 310
Helix 59	AG5	E	374	377	Right-handed 310
Helix 60	AG6	E	381	396	Right-handed alpha
Helix 61	AG7	E	419	434	Right-handed alpha
Helix 62	AG8	E	445	453	Right-handed alpha
Helix 63	AG9	E	470	488	Right-handed alpha
Helix 64	AH1	E	506	521	Right-handed alpha
Helix 65	AH2	E	529	557	Right-handed alpha
Helix 66	AH3	E	559	574	Right-handed alpha
Helix 67	AH4	E	580	602	Right-handed alpha
Helix 68	AH5	E	608	625	Right-handed alpha
Helix 69	AH6	E	636	650	Right-handed alpha
Helix 70	AH7	E	651	654	Right-handed 310
Helix 71	AH8	E	720	728	Right-handed alpha
Helix 72	AH9	E	729	732	Right-handed 310
Helix 73	AI1	E	744	769	Right-handed alpha
Helix 74	AI2	E	772	793	Right-handed alpha
Helix 75	AI3	E	835	840	Right-handed alpha
Helix 76	AI4	G	244	256	Right-handed alpha
Helix 77	AI5	G	269	285	Right-handed alpha
Helix 78	AI6	G	299	315	Right-handed alpha
Helix 79	AI7	G	316	318	Right-handed 310
Helix 80	AI8	G	333	340	Right-handed alpha
Helix 81	AI9	G	347	358	Right-handed alpha
Helix 82	AJ1	G	362	366	Right-handed 310
Helix 83	AJ2	G	373	377	Right-handed 310
Helix 84	AJ3	G	381	395	Right-handed alpha
Helix 85	AJ4	G	419	434	Right-handed alpha
Helix 86	AJ5	G	445	453	Right-handed alpha
Helix 87	AJ6	G	469	488	Right-handed alpha
Helix 88	AJ7	G	506	521	Right-handed alpha
Helix 89	AJ8	G	529	558	Right-handed alpha
Helix 90	AJ9	G	559	577	Right-handed alpha
Helix 91	AK1	G	580	602	Right-handed alpha
Helix 92	AK2	G	608	625	Right-handed alpha
Helix 93	AK3	G	636	649	Right-handed alpha
Helix 94	AK4	G	720	728	Right-handed alpha
Helix 95	AK5	G	729	732	Right-handed 310
Helix 96	AK6	G	744	769	Right-handed alpha
Helix 97	AK7	G	772	793	Right-handed alpha
Helix 98	AK8	G	837	840	Right-handed 310
Helix 99	AK9	I	244	256	Right-handed alpha
Helix 100	AL1	I	269	283	Right-handed alpha
Helix 101	AL2	I	299	315	Right-handed alpha
Helix 102	AL3	I	333	341	Right-handed alpha
Helix 103	AL4	I	347	357	Right-handed alpha
Helix 104	AL5	I	362	366	Right-handed 310
Helix 105	AL6	I	374	377	Right-handed 310
Helix 106	AL7	I	381	395	Right-handed alpha
Helix 107	AL8	I	419	434	Right-handed alpha
Helix 108	AL9	I	445	451	Right-handed alpha
Helix 109	AM1	I	469	488	Right-handed alpha
Helix 110	AM2	I	507	521	Right-handed alpha
Helix 111	AM3	I	530	556	Right-handed alpha
Helix 112	AM4	I	559	575	Right-handed alpha
Helix 113	AM5	I	582	591	Right-handed alpha
Helix 114	AM6	I	593	603	Right-handed alpha
Helix 115	AM7	I	608	625	Right-handed alpha
Helix 116	AM8	I	637	649	Right-handed alpha
Helix 117	AM9	I	720	728	Right-handed alpha
Helix 118	AN1	I	729	732	Right-handed 310
Helix 119	AN2	I	744	769	Right-handed alpha
Helix 120	AN3	I	772	794	Right-handed alpha
Helix 121	AN4	I	835	840	Right-handed alpha
Helix 122	AN5	K	244	256	Right-handed alpha
Helix 123	AN6	K	269	283	Right-handed alpha
Helix 124	AN7	K	299	315	Right-handed alpha
Helix 125	AN8	K	333	340	Right-handed alpha
Helix 126	AN9	K	347	357	Right-handed alpha
Helix 127	AO1	K	362	366	Right-handed 310
Helix 128	AO2	K	374	377	Right-handed 310
Helix 129	AO3	K	381	396	Right-handed alpha
Helix 130	AO4	K	419	434	Right-handed alpha
Helix 131	AO5	K	445	453	Right-handed alpha
Helix 132	AO6	K	469	489	Right-handed alpha
Helix 133	AO7	K	506	520	Right-handed alpha
Helix 134	AO8	K	528	558	Right-handed alpha
Helix 135	AO9	K	559	572	Right-handed alpha
Helix 136	AP1	K	582	601	Right-handed alpha
Helix 137	AP2	K	608	625	Right-handed alpha
Helix 138	AP3	K	636	649	Right-handed alpha
Helix 139	AP4	K	720	728	Right-handed alpha
Helix 140	AP5	K	729	732	Right-handed 310
Helix 141	AP6	K	744	769	Right-handed alpha
Helix 142	AP7	K	772	793	Right-handed alpha
Helix 143	AP8	K	835	840	Right-handed alpha
Helix 144	AP9	K	889	892	Right-handed 310

There are 31 sheets in PDB entry 5F98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	343	346	parallel
Strand 3	A	293	296	parallel
Strand 4	A	368	372	parallel
Strand 5	A	404	409	parallel
Strand 6	A	260	263	parallel
Strand 7	A	438	440	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	462	first strand
Strand 2	A	737	742	parallel
Strand 3	A	711	715	parallel
Strand 4	A	630	633	parallel
Strand 5	A	693	696	parallel
Strand 6	A	659	661	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	819	first strand
Strand 2	A	806	810	anti-parallel
Strand 3	A	892	896	anti-parallel
Strand 4	A	902	904	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	826	first strand
Strand 2	A	830	833	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	846	first strand
Strand 2	A	858	864	anti-parallel
Strand 3	A	872	879	anti-parallel
Strand 4	A	882	887	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	343	346	parallel
Strand 3	C	293	296	parallel
Strand 4	C	368	372	parallel
Strand 5	C	404	409	parallel
Strand 6	C	260	263	parallel
Strand 7	C	438	440	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	462	first strand
Strand 2	C	737	742	parallel
Strand 3	C	711	715	parallel
Strand 4	C	630	633	parallel
Strand 5	C	693	696	parallel
Strand 6	C	659	661	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	816	819	first strand
Strand 2	C	806	810	anti-parallel
Strand 3	C	892	896	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	833	first strand
Strand 2	C	823	826	anti-parallel
Strand 3	C	916	917	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	842	846	first strand
Strand 2	C	858	864	anti-parallel
Strand 3	C	872	879	anti-parallel
Strand 4	C	882	887	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	324	first strand
Strand 2	E	343	346	parallel
Strand 3	E	293	296	parallel
Strand 4	E	368	372	parallel
Strand 5	E	404	409	parallel
Strand 6	E	260	263	parallel
Strand 7	E	438	440	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	462	first strand
Strand 2	E	737	742	parallel
Strand 3	E	711	715	parallel
Strand 4	E	630	634	parallel
Strand 5	E	693	696	parallel
Strand 6	E	658	661	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	816	819	first strand
Strand 2	E	806	810	anti-parallel
Strand 3	E	892	896	anti-parallel
Strand 4	E	903	904	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	826	first strand
Strand 2	E	830	833	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	842	846	first strand
Strand 2	E	860	864	anti-parallel
Strand 3	E	872	877	anti-parallel
Strand 4	E	884	887	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	321	324	first strand
Strand 2	G	343	346	parallel
Strand 3	G	293	296	parallel
Strand 4	G	368	371	parallel
Strand 5	G	404	409	parallel
Strand 6	G	260	263	parallel
Strand 7	G	438	440	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	457	462	first strand
Strand 2	G	737	742	parallel
Strand 3	G	711	715	parallel
Strand 4	G	630	633	parallel
Strand 5	G	693	696	parallel
Strand 6	G	658	661	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	816	819	first strand
Strand 2	G	806	810	anti-parallel
Strand 3	G	892	896	anti-parallel
Strand 4	G	902	904	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	830	833	first strand
Strand 2	G	823	826	anti-parallel
Strand 3	G	916	917	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	842	846	first strand
Strand 2	G	856	864	anti-parallel
Strand 3	G	872	879	anti-parallel
Strand 4	G	882	887	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	321	324	first strand
Strand 2	I	343	346	parallel
Strand 3	I	293	296	parallel
Strand 4	I	368	372	parallel
Strand 5	I	404	409	parallel
Strand 6	I	260	263	parallel
Strand 7	I	438	440	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	737	742	parallel
Strand 3	I	461	462	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	737	742	parallel
Strand 3	I	711	715	parallel
Strand 4	I	630	633	parallel
Strand 5	I	693	696	parallel
Strand 6	I	660	661	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	818	819	first strand
Strand 2	I	806	810	anti-parallel
Strand 3	I	892	896	anti-parallel
Strand 4	I	902	903	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	823	826	first strand
Strand 2	I	830	833	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	842	846	first strand
Strand 2	I	858	864	anti-parallel
Strand 3	I	872	877	anti-parallel
Strand 4	I	885	887	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	321	324	first strand
Strand 2	K	343	346	parallel
Strand 3	K	293	296	parallel
Strand 4	K	368	372	parallel
Strand 5	K	404	409	parallel
Strand 6	K	260	263	parallel
Strand 7	K	438	440	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	457	462	first strand
Strand 2	K	737	742	parallel
Strand 3	K	711	715	parallel
Strand 4	K	630	633	parallel
Strand 5	K	693	696	parallel
Strand 6	K	658	661	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	816	819	first strand
Strand 2	K	806	809	anti-parallel
Strand 3	K	893	896	anti-parallel
Strand 4	K	902	903	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	823	826	first strand
Strand 2	K	830	833	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	842	843	first strand
Strand 2	K	858	864	anti-parallel
Strand 3	K	872	879	anti-parallel
Strand 4	K	882	887	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F98

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F98