Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F9D entry

There are 2 chains in PDB entry 5F9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 34HIS 460
C
 VAL 3HIS 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5F9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 43Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
55 76Right-handed alpha
Helix 4
AA4
A
80 101Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
149 170Right-handed alpha
Helix 7
AA7
A
198 203Right-handed 310
Helix 8
AA8
A
255 274Right-handed alpha
Helix 9
AA9
A
298 317Right-handed alpha
Helix 10
AB1
A
317 324Right-handed alpha
Helix 11
AB2
A
347 373Right-handed alpha
Helix 12
AB3
A
374 377Right-handed 310
Helix 13
AB4
A
378 388Right-handed alpha
Helix 14
AB5
A
422 436Right-handed alpha
Helix 15
AB6
A
437 458Right-handed alpha
Helix 16
AB7
C
26 31Right-handed alpha
Helix 17
AB8
C
87 91Right-handed 310
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There are 4 sheets in PDB entry 5F9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
242 253anti-parallel
Strand 5
A
223 234anti-parallel
Strand 6
A
213 220anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
292 294anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
109 113parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
47 52anti-parallel
Strand 6
C
58 60anti-parallel
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