Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F9G entry

There are 2 chains in PDB entry 5F9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 172
A
 VAL 174ASN 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 5F9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 169Right-handed 310
Helix 2
AA2
A
174 178Right-handed 310
Helix 3
AA3
A
181 187Right-handed 310
Helix 4
AA4
A
188 193Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5F9G.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
37 48anti-parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
211 221anti-parallel
Strand 6
A
224 234anti-parallel
Strand 7
A
120 130parallel
Strand 8
A
133 144anti-parallel
Strand 9
A
149 155anti-parallel
Strand 10
A
78 88anti-parallel
Strand 11
A
60 69anti-parallel
Strand 12
A
9 16anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il