Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F9M entry

There are 4 chains in PDB entry 5F9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	GLU 343
B	ALA 0	GLU 343
C	ALA 0	GLU 343
D	ALA 0	GLU 218

There are 61 helices in PDB entry 5F9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	29	43	Right-handed alpha
Helix 3	AA3	A	57	64	Right-handed alpha
Helix 4	AA4	A	64	77	Right-handed alpha
Helix 5	AA5	A	92	100	Right-handed 310
Helix 6	AA6	A	101	107	Right-handed alpha
Helix 7	AA7	A	115	117	Right-handed 310
Helix 8	AA8	A	118	128	Right-handed alpha
Helix 9	AA9	A	149	161	Right-handed alpha
Helix 10	AB1	A	183	187	Right-handed 310
Helix 11	AB2	A	217	224	Right-handed alpha
Helix 12	AB3	A	231	235	Right-handed 310
Helix 13	AB4	A	250	264	Right-handed alpha
Helix 14	AB5	A	278	282	Right-handed 310
Helix 15	AB6	A	285	298	Right-handed alpha
Helix 16	AB7	B	22	26	Right-handed 310
Helix 17	AB8	B	29	43	Right-handed alpha
Helix 18	AB9	B	57	64	Right-handed alpha
Helix 19	AC1	B	64	77	Right-handed alpha
Helix 20	AC2	B	92	100	Right-handed 310
Helix 21	AC3	B	101	108	Right-handed alpha
Helix 22	AC4	B	115	117	Right-handed 310
Helix 23	AC5	B	118	129	Right-handed alpha
Helix 24	AC6	B	149	161	Right-handed alpha
Helix 25	AC7	B	183	187	Right-handed 310
Helix 26	AC8	B	217	224	Right-handed alpha
Helix 27	AC9	B	231	236	Right-handed 310
Helix 28	AD1	B	250	264	Right-handed alpha
Helix 29	AD2	B	278	282	Right-handed 310
Helix 30	AD3	B	283	298	Right-handed alpha
Helix 31	AD4	C	22	26	Right-handed 310
Helix 32	AD5	C	29	43	Right-handed alpha
Helix 33	AD6	C	57	64	Right-handed alpha
Helix 34	AD7	C	64	78	Right-handed alpha
Helix 35	AD8	C	92	100	Right-handed 310
Helix 36	AD9	C	101	107	Right-handed alpha
Helix 37	AE1	C	115	117	Right-handed 310
Helix 38	AE2	C	118	129	Right-handed alpha
Helix 39	AE3	C	149	161	Right-handed alpha
Helix 40	AE4	C	183	187	Right-handed 310
Helix 41	AE5	C	217	224	Right-handed alpha
Helix 42	AE6	C	231	236	Right-handed 310
Helix 43	AE7	C	250	264	Right-handed alpha
Helix 44	AE8	C	266	268	Right-handed 310
Helix 45	AE9	C	278	282	Right-handed 310
Helix 46	AF1	C	283	298	Right-handed alpha
Helix 47	AF2	D	22	26	Right-handed 310
Helix 48	AF3	D	29	43	Right-handed alpha
Helix 49	AF4	D	57	64	Right-handed alpha
Helix 50	AF5	D	64	78	Right-handed alpha
Helix 51	AF6	D	92	100	Right-handed 310
Helix 52	AF7	D	101	107	Right-handed alpha
Helix 53	AF8	D	115	117	Right-handed 310
Helix 54	AF9	D	118	129	Right-handed alpha
Helix 55	AG1	D	149	161	Right-handed alpha
Helix 56	AG2	D	183	187	Right-handed 310
Helix 57	AG3	D	217	224	Right-handed alpha
Helix 58	AG4	D	231	236	Right-handed 310
Helix 59	AG5	D	250	264	Right-handed alpha
Helix 60	AG6	D	278	282	Right-handed 310
Helix 61	AG7	D	283	298	Right-handed alpha

There are 12 sheets in PDB entry 5F9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	13	17	parallel
Strand 3	A	81	86	parallel
Strand 4	A	111	114	parallel
Strand 5	A	133	134	parallel
Strand 6	A	320	321	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	334	337	anti-parallel
Strand 3	A	325	329	anti-parallel
Strand 4	A	207	216	anti-parallel
Strand 5	A	238	243	parallel
Strand 6	A	272	276	parallel
Strand 7	A	305	309	parallel
Strand 8	A	200	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	194	195	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	13	17	parallel
Strand 3	B	81	86	parallel
Strand 4	B	111	114	parallel
Strand 5	B	133	134	parallel
Strand 6	B	320	321	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	325	329	anti-parallel
Strand 4	B	208	216	anti-parallel
Strand 5	B	238	243	parallel
Strand 6	B	272	276	parallel
Strand 7	B	305	309	parallel
Strand 8	B	200	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	194	195	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	13	17	parallel
Strand 3	C	81	86	parallel
Strand 4	C	111	114	parallel
Strand 5	C	133	134	parallel
Strand 6	C	320	321	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	334	337	anti-parallel
Strand 3	C	325	329	anti-parallel
Strand 4	C	207	216	anti-parallel
Strand 5	C	238	243	parallel
Strand 6	C	270	276	parallel
Strand 7	C	305	309	parallel
Strand 8	C	200	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	194	195	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	13	17	parallel
Strand 3	D	81	86	parallel
Strand 4	D	111	114	parallel
Strand 5	D	133	134	parallel
Strand 6	D	320	321	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	334	337	anti-parallel
Strand 3	D	325	329	anti-parallel
Strand 4	D	207	216	anti-parallel
Strand 5	D	238	243	parallel
Strand 6	D	270	276	parallel
Strand 7	D	305	309	parallel
Strand 8	D	200	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9M