Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F9O entry

There are 3 chains in PDB entry 5F9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 44	ILE 491
H	GLN 1	LYS 223
L	GLU 1	ARG 210

There are 16 helices in PDB entry 5F9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	64	74	Right-handed alpha
Helix 2	AA2	G	98	116	Right-handed alpha
Helix 3	AA3	G	335	353	Right-handed alpha
Helix 4	AA4	G	368	373	Right-handed alpha
Helix 5	AA5	G	392	396	Right-handed 310
Helix 6	AA6	G	474	484	Right-handed alpha
Helix 7	AA7	H	28	32	Right-handed 310
Helix 8	AA8	H	62	65	Right-handed 310
Helix 9	AA9	H	74	76	Right-handed 310
Helix 10	AB1	H	87	91	Right-handed 310
Helix 11	AB2	H	165	167	Right-handed 310
Helix 12	AB3	H	196	199	Right-handed 310
Helix 13	AB4	H	210	213	Right-handed 310
Helix 14	AB5	L	79	83	Right-handed 310
Helix 15	AB6	L	120	126	Right-handed alpha
Helix 16	AB7	L	182	186	Right-handed alpha

There are 17 sheets in PDB entry 5F9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	486	490	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	85	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	202	first strand
Strand 2	G	120	123	anti-parallel
Strand 3	G	431	434	anti-parallel
Strand 4	G	423	425	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	465	470	first strand
Strand 5	G	358	361	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	328	334	first strand
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	106	112	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	204	209	anti-parallel
Strand 3	H	214	219	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9O