Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F9P entry

There are 2 chains in PDB entry 5F9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2HIS 242
B
 PRO 2LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5F9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 39Right-handed alpha
Helix 2
AA2
A
66 76Right-handed alpha
Helix 3
AA3
A
76 82Right-handed alpha
Helix 4
AA4
A
82 90Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
135 144Right-handed alpha
Helix 7
AA7
A
145 153Right-handed 310
Helix 8
AA8
A
183 192Right-handed alpha
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
199 213Right-handed alpha
Helix 11
AB2
B
21 39Right-handed alpha
Helix 12
AB3
B
66 76Right-handed alpha
Helix 13
AB4
B
76 82Right-handed alpha
Helix 14
AB5
B
82 90Right-handed alpha
Helix 15
AB6
B
132 134Right-handed 310
Helix 16
AB7
B
135 144Right-handed alpha
Helix 17
AB8
B
145 153Right-handed 310
Helix 18
AB9
B
183 192Right-handed alpha
Helix 19
AC1
B
194 198Right-handed 310
Helix 20
AC2
B
199 213Right-handed alpha
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There are 4 sheets in PDB entry 5F9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
114 115anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
218 229anti-parallel
Strand 5
A
123 131anti-parallel
Strand 6
A
173 181anti-parallel
Strand 7
A
156 168anti-parallel
Strand 8
A
93 106anti-parallel
Strand 9
A
11 18anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
114 115anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
93 106anti-parallel
Strand 3
B
156 168anti-parallel
Strand 4
B
174 181anti-parallel
Strand 5
B
123 130anti-parallel
Strand 6
B
218 229anti-parallel
Strand 7
B
44 52anti-parallel
Strand 8
B
57 64anti-parallel
Strand 9
B
11 18anti-parallel
Strand 10
B
93 106anti-parallel
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