Analysis of interatomic Contacts of Structural Units in PDB entry:
5F9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F9Z entry

There are 2 chains in PDB entry 5F9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 179TYR 688
B
 SER 191TYR 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5F9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 214Right-handed alpha
Helix 2
AA2
A
229 249Right-handed alpha
Helix 3
AA3
A
263 268Right-handed alpha
Helix 4
AA4
A
276 279Right-handed 310
Helix 5
AA5
A
301 313Right-handed alpha
Helix 6
AA6
A
315 319Right-handed 310
Helix 7
AA7
A
357 378Right-handed alpha
Helix 8
AA8
A
425 432Right-handed alpha
Helix 9
AA9
A
454 465Right-handed alpha
Helix 10
AB1
A
493 510Right-handed alpha
Helix 11
AB2
A
523 534Right-handed alpha
Helix 12
AB3
A
543 550Right-handed alpha
Helix 13
AB4
A
569 595Right-handed alpha
Helix 14
AB5
A
602 604Right-handed 310
Helix 15
AB6
A
605 612Right-handed alpha
Helix 16
AB7
A
623 636Right-handed alpha
Helix 17
AB8
B
202 214Right-handed alpha
Helix 18
AB9
B
229 249Right-handed alpha
Helix 19
AC1
B
263 267Right-handed alpha
Helix 20
AC2
B
301 313Right-handed alpha
Helix 21
AC3
B
315 319Right-handed 310
Helix 22
AC4
B
357 379Right-handed alpha
Helix 23
AC5
B
425 432Right-handed alpha
Helix 24
AC6
B
454 465Right-handed alpha
Helix 25
AC7
B
493 510Right-handed alpha
Helix 26
AC8
B
523 534Right-handed alpha
Helix 27
AC9
B
543 548Right-handed alpha
Helix 28
AD1
B
569 596Right-handed alpha
Helix 29
AD2
B
602 605Right-handed 310
Helix 30
AD3
B
606 612Right-handed alpha
Helix 31
AD4
B
623 637Right-handed alpha
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There are 9 sheets in PDB entry 5F9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
226 228anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
321 330parallel
Strand 3
A
345 355anti-parallel
Strand 4
A
446 453anti-parallel
Strand 5
A
413 424anti-parallel
Strand 6
A
400 408anti-parallel
Strand 7
A
385 388anti-parallel
Strand 8
A
652 657anti-parallel
Strand 9
A
680 685anti-parallel
Strand 10
A
615 620anti-parallel
Strand 11
A
597 599parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
289 297anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
B
281 286anti-parallel
Strand 5
B
289 297anti-parallel
Strand 6
B
260 262anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
442 444anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 516first strand
Strand 2
A
481 485parallel
Strand 3
A
538 542parallel
Strand 4
A
551 556anti-parallel
Strand 5
A
562 566anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
226 228anti-parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
321 330parallel
Strand 3
B
345 355anti-parallel
Strand 4
B
446 453anti-parallel
Strand 5
B
413 424anti-parallel
Strand 6
B
400 408anti-parallel
Strand 7
B
385 388anti-parallel
Strand 8
B
651 657anti-parallel
Strand 9
B
680 686anti-parallel
Strand 10
B
615 620anti-parallel
Strand 11
B
597 599parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
442 444anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 516first strand
Strand 2
B
481 485parallel
Strand 3
B
538 542parallel
Strand 4
B
551 556anti-parallel
Strand 5
B
562 566anti-parallel
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