Analysis of interatomic Contacts of Structural Units in PDB entry:
5FA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FA9 entry

There are 2 chains in PDB entry 5FA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 316
B
 MET 1PHE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5FA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
90 93Right-handed 310
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
141 146Right-handed alpha
Helix 7
AA7
A
154 160Right-handed 310
Helix 8
AA8
A
172 180Right-handed alpha
Helix 9
AA9
A
181 191Right-handed alpha
Helix 10
AB1
A
250 254Right-handed 310
Helix 11
AB2
A
276 280Right-handed 310
Helix 12
AB3
A
296 300Right-handed alpha
Helix 13
AB4
A
304 306Right-handed 310
Helix 14
AB5
A
307 312Right-handed alpha
Helix 15
AB6
B
11 20Right-handed alpha
Helix 16
AB7
B
64 75Right-handed alpha
Helix 17
AB8
B
90 93Right-handed 310
Helix 18
AB9
B
100 102Right-handed 310
Helix 19
AC1
B
103 116Right-handed alpha
Helix 20
AC2
B
136 140Right-handed 310
Helix 21
AC3
B
141 146Right-handed alpha
Helix 22
AC4
B
154 160Right-handed 310
Helix 23
AC5
B
172 180Right-handed alpha
Helix 24
AC6
B
181 191Right-handed alpha
Helix 25
AC7
B
250 254Right-handed 310
Helix 26
AC8
B
276 280Right-handed 310
Helix 27
AC9
B
296 300Right-handed alpha
Helix 28
AD1
B
304 306Right-handed 310
Helix 29
AD2
B
307 312Right-handed alpha
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There are 8 sheets in PDB entry 5FA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
95 98parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
51 59anti-parallel
Strand 5
A
25 33anti-parallel
Strand 6
A
132 134anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
87 88anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
291 295anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
234 235anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
267 272anti-parallel
Strand 5
A
256 261anti-parallel
Strand 6
A
244 249anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
95 98parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
51 59anti-parallel
Strand 5
B
25 33anti-parallel
Strand 6
B
132 134anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
87 88anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
291 295anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
234 235anti-parallel
Strand 3
B
283 286anti-parallel
Strand 4
B
267 272anti-parallel
Strand 5
B
256 261anti-parallel
Strand 6
B
244 249anti-parallel
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