Analysis of interatomic Contacts of Structural Units in PDB entry:
5FAC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FAC entry

There are 8 chains in PDB entry 5FAC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 8	LEU 140
A	ALA 142	GLU 391
B	ASP 11	LEU 140
B	ALA 142	GLU 391
C	ASP 9	LEU 140
C	ALA 142	GLU 391
D	ASP 11	LEU 140
D	ALA 142	GLU 391

There are 72 helices in PDB entry 5FAC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	14	Right-handed 310
Helix 2	AA2	A	22	36	Right-handed alpha
Helix 3	AA3	A	45	51	Right-handed alpha
Helix 4	AA4	A	53	64	Right-handed alpha
Helix 5	AA5	A	73	82	Right-handed alpha
Helix 6	AA6	A	103	110	Right-handed alpha
Helix 7	AA7	A	118	133	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	190	210	Right-handed alpha
Helix 10	AB1	A	221	228	Right-handed alpha
Helix 11	AB2	A	229	232	Right-handed 310
Helix 12	AB3	A	239	244	Right-handed 310
Helix 13	AB4	A	254	258	Right-handed 310
Helix 14	AB5	A	282	286	Right-handed 310
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	307	311	Right-handed 310
Helix 17	AB8	A	361	369	Right-handed alpha
Helix 18	AB9	A	372	379	Right-handed alpha
Helix 19	AC1	B	11	14	Right-handed 310
Helix 20	AC2	B	22	36	Right-handed alpha
Helix 21	AC3	B	45	51	Right-handed alpha
Helix 22	AC4	B	53	64	Right-handed alpha
Helix 23	AC5	B	73	82	Right-handed alpha
Helix 24	AC6	B	103	110	Right-handed alpha
Helix 25	AC7	B	118	133	Right-handed alpha
Helix 26	AC8	B	154	170	Right-handed alpha
Helix 27	AC9	B	190	210	Right-handed alpha
Helix 28	AD1	B	221	228	Right-handed alpha
Helix 29	AD2	B	229	232	Right-handed 310
Helix 30	AD3	B	239	244	Right-handed 310
Helix 31	AD4	B	254	258	Right-handed 310
Helix 32	AD5	B	282	286	Right-handed 310
Helix 33	AD6	B	301	305	Right-handed 310
Helix 34	AD7	B	307	311	Right-handed 310
Helix 35	AD8	B	361	369	Right-handed alpha
Helix 36	AD9	B	372	379	Right-handed alpha
Helix 37	AE1	C	9	14	Right-handed 310
Helix 38	AE2	C	22	36	Right-handed alpha
Helix 39	AE3	C	45	51	Right-handed alpha
Helix 40	AE4	C	53	64	Right-handed alpha
Helix 41	AE5	C	73	82	Right-handed alpha
Helix 42	AE6	C	103	110	Right-handed alpha
Helix 43	AE7	C	118	133	Right-handed alpha
Helix 44	AE8	C	154	170	Right-handed alpha
Helix 45	AE9	C	190	210	Right-handed alpha
Helix 46	AF1	C	221	228	Right-handed alpha
Helix 47	AF2	C	229	232	Right-handed 310
Helix 48	AF3	C	239	244	Right-handed 310
Helix 49	AF4	C	254	258	Right-handed 310
Helix 50	AF5	C	282	286	Right-handed 310
Helix 51	AF6	C	301	305	Right-handed 310
Helix 52	AF7	C	307	311	Right-handed 310
Helix 53	AF8	C	361	369	Right-handed alpha
Helix 54	AF9	C	372	379	Right-handed alpha
Helix 55	AG1	D	11	14	Right-handed 310
Helix 56	AG2	D	21	36	Right-handed alpha
Helix 57	AG3	D	45	51	Right-handed alpha
Helix 58	AG4	D	53	64	Right-handed alpha
Helix 59	AG5	D	73	82	Right-handed alpha
Helix 60	AG6	D	103	110	Right-handed alpha
Helix 61	AG7	D	118	133	Right-handed alpha
Helix 62	AG8	D	154	170	Right-handed alpha
Helix 63	AG9	D	190	210	Right-handed alpha
Helix 64	AH1	D	221	228	Right-handed alpha
Helix 65	AH2	D	229	232	Right-handed 310
Helix 66	AH3	D	239	244	Right-handed 310
Helix 67	AH4	D	254	258	Right-handed 310
Helix 68	AH5	D	282	286	Right-handed 310
Helix 69	AH6	D	301	305	Right-handed 310
Helix 70	AH7	D	307	311	Right-handed 310
Helix 71	AH8	D	361	369	Right-handed alpha
Helix 72	AH9	D	372	379	Right-handed alpha

There are 16 sheets in PDB entry 5FAC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	315	318	anti-parallel
Strand 3	A	348	352	anti-parallel
Strand 4	A	263	268	anti-parallel
Strand 5	A	16	21	anti-parallel
Strand 6	A	386	389	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	173	179	parallel
Strand 3	A	136	141	parallel
Strand 4	A	113	116	parallel
Strand 5	A	92	95	parallel
Strand 6	A	68	71	parallel
Strand 7	A	40	44	parallel
Strand 8	A	235	236	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	293	298	anti-parallel
Strand 3	A	334	337	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	287	288	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	315	318	anti-parallel
Strand 3	B	348	352	anti-parallel
Strand 4	B	263	268	anti-parallel
Strand 5	B	16	21	anti-parallel
Strand 6	B	386	389	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	173	179	parallel
Strand 3	B	136	141	parallel
Strand 4	B	113	116	parallel
Strand 5	B	92	95	parallel
Strand 6	B	68	71	parallel
Strand 7	B	40	44	parallel
Strand 8	B	235	236	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	293	298	anti-parallel
Strand 3	B	334	337	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	287	288	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	315	318	anti-parallel
Strand 3	C	348	352	anti-parallel
Strand 4	C	263	268	anti-parallel
Strand 5	C	16	21	anti-parallel
Strand 6	C	386	389	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	173	179	parallel
Strand 3	C	136	141	parallel
Strand 4	C	113	116	parallel
Strand 5	C	92	95	parallel
Strand 6	C	68	71	parallel
Strand 7	C	40	44	parallel
Strand 8	C	235	236	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	293	298	anti-parallel
Strand 3	C	334	337	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	287	288	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	324	first strand
Strand 2	D	315	318	anti-parallel
Strand 3	D	348	352	anti-parallel
Strand 4	D	263	268	anti-parallel
Strand 5	D	16	20	anti-parallel
Strand 6	D	386	388	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	173	179	parallel
Strand 3	D	136	141	parallel
Strand 4	D	113	116	parallel
Strand 5	D	92	95	parallel
Strand 6	D	68	71	parallel
Strand 7	D	40	44	parallel
Strand 8	D	235	236	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	293	298	anti-parallel
Strand 3	D	334	337	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FAC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FAC