Analysis of interatomic Contacts of Structural Units in PDB entry:
5FAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FAP entry

There are 2 chains in PDB entry 5FAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 29ASP 286
A
 ASP 29ASP 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5FAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 42Right-handed alpha
Helix 2
AA2
B
69 71Right-handed 310
Helix 3
AA3
B
72 87Right-handed alpha
Helix 4
AA4
B
89 92Right-handed 310
Helix 5
AA5
B
98 102Right-handed 310
Helix 6
AA6
B
108 112Right-handed 310
Helix 7
AA7
B
119 129Right-handed alpha
Helix 8
AA8
B
131 143Right-handed alpha
Helix 9
AA9
B
144 156Right-handed alpha
Helix 10
AB1
B
167 171Right-handed 310
Helix 11
AB2
B
182 195Right-handed alpha
Helix 12
AB3
B
200 213Right-handed alpha
Helix 13
AB4
B
220 225Right-handed 310
Helix 14
AB5
B
239 241Right-handed 310
Helix 15
AB6
B
273 286Right-handed alpha
Helix 16
AB7
A
30 42Right-handed alpha
Helix 17
AB8
A
69 71Right-handed 310
Helix 18
AB9
A
72 84Right-handed alpha
Helix 19
AC1
A
85 86Right-handed 310
Helix 20
AC2
A
87 91Right-handed 310
Helix 21
AC3
A
108 113Right-handed 310
Helix 22
AC4
A
119 129Right-handed alpha
Helix 23
AC5
A
131 143Right-handed alpha
Helix 24
AC6
A
144 155Right-handed alpha
Helix 25
AC7
A
167 171Right-handed 310
Helix 26
AC8
A
182 195Right-handed alpha
Helix 27
AC9
A
200 213Right-handed alpha
Helix 28
AD1
A
221 225Right-handed 310
Helix 29
AD2
A
239 241Right-handed 310
Helix 30
AD3
A
273 286Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5FAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
44 51anti-parallel
Strand 3
B
257 264anti-parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
230 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
116 118anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
230 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
115 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il