Analysis of interatomic Contacts of Structural Units in PDB entry:
5FAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FAX entry

There are 2 chains in PDB entry 5FAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2HIS 433
B
 ASP 2HIS 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5FAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
9 18Right-handed alpha
Helix 3
AA3
A
67 78Right-handed alpha
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
138 151Right-handed alpha
Helix 6
AA6
A
188 196Right-handed 310
Helix 7
AA7
A
235 239Right-handed 310
Helix 8
AA8
A
252 275Right-handed alpha
Helix 9
AA9
A
280 292Right-handed alpha
Helix 10
AB1
A
310 316Right-handed alpha
Helix 11
AB2
B
2 8Right-handed alpha
Helix 12
AB3
B
9 16Right-handed alpha
Helix 13
AB4
B
67 78Right-handed alpha
Helix 14
AB5
B
109 120Right-handed alpha
Helix 15
AB6
B
138 151Right-handed alpha
Helix 16
AB7
B
188 192Right-handed 310
Helix 17
AB8
B
235 239Right-handed 310
Helix 18
AB9
B
252 275Right-handed alpha
Helix 19
AC1
B
280 292Right-handed alpha
Helix 20
AC2
B
310 316Right-handed alpha
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There are 8 sheets in PDB entry 5FAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
90 95parallel
Strand 3
A
25 30parallel
Strand 4
A
124 127parallel
Strand 5
A
154 158parallel
Strand 6
A
179 184parallel
Strand 7
A
219 222parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
241 242anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
398 403anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 338first strand
Strand 2
A
409 419anti-parallel
Strand 3
A
366 372anti-parallel
Strand 4
A
378 380anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
90 95parallel
Strand 3
B
25 30parallel
Strand 4
B
124 127parallel
Strand 5
B
154 158parallel
Strand 6
B
179 184parallel
Strand 7
B
219 222parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
247 250anti-parallel
Strand 3
B
241 242anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 321first strand
Strand 2
B
428 432anti-parallel
Strand 3
B
344 349anti-parallel
Strand 4
B
398 403anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 338first strand
Strand 2
B
409 419anti-parallel
Strand 3
B
366 372anti-parallel
Strand 4
B
378 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il