Analysis of interatomic Contacts of Structural Units in PDB entry:
5FB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FB5 entry

There are 2 chains in PDB entry 5FB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	ARG 599
B	PRO 5	ARG 599

There are 30 helices in PDB entry 5FB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed 310
Helix 3	AA3	A	112	118	Right-handed alpha
Helix 4	AA4	A	234	245	Right-handed alpha
Helix 5	AA5	A	324	329	Right-handed 310
Helix 6	AA6	A	348	352	Right-handed 310
Helix 7	AA7	A	385	393	Right-handed alpha
Helix 8	AA8	A	394	397	Right-handed 310
Helix 9	AA9	A	412	420	Right-handed alpha
Helix 10	AB1	A	422	426	Right-handed 310
Helix 11	AB2	A	468	480	Right-handed alpha
Helix 12	AB3	A	492	496	Right-handed 310
Helix 13	AB4	A	499	506	Right-handed alpha
Helix 14	AB5	A	519	534	Right-handed alpha
Helix 15	AB6	A	566	579	Right-handed alpha
Helix 16	AB7	B	31	41	Right-handed alpha
Helix 17	AB8	B	112	118	Right-handed alpha
Helix 18	AB9	B	234	243	Right-handed alpha
Helix 19	AC1	B	245	250	Right-handed alpha
Helix 20	AC2	B	324	329	Right-handed 310
Helix 21	AC3	B	348	352	Right-handed 310
Helix 22	AC4	B	385	393	Right-handed alpha
Helix 23	AC5	B	394	397	Right-handed 310
Helix 24	AC6	B	412	417	Right-handed alpha
Helix 25	AC7	B	426	431	Right-handed alpha
Helix 26	AC8	B	468	480	Right-handed alpha
Helix 27	AC9	B	492	496	Right-handed 310
Helix 28	AD1	B	499	506	Right-handed alpha
Helix 29	AD2	B	519	534	Right-handed alpha
Helix 30	AD3	B	566	580	Right-handed alpha

There are 16 sheets in PDB entry 5FB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	51	first strand
Strand 2	A	8	14	anti-parallel
Strand 3	A	77	81	anti-parallel
Strand 4	A	89	99	anti-parallel
Strand 5	A	105	111	anti-parallel
Strand 6	A	62	65	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	581	584	parallel
Strand 3	A	551	557	anti-parallel
Strand 4	A	126	131	anti-parallel
Strand 5	A	535	541	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	561	563	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	165	first strand
Strand 2	A	511	518	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	344	347	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	258	first strand
Strand 2	A	172	178	anti-parallel
Strand 3	A	208	214	anti-parallel
Strand 4	A	293	299	anti-parallel
Strand 5	A	281	287	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	204	205	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	222	225	anti-parallel
Strand 3	A	273	276	parallel
Strand 4	A	266	268	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	314	first strand
Strand 2	A	356	362	anti-parallel
Strand 3	A	371	374	anti-parallel
Strand 4	A	398	400	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	7	15	anti-parallel
Strand 3	B	75	81	anti-parallel
Strand 4	B	89	98	anti-parallel
Strand 5	B	105	111	anti-parallel
Strand 6	B	62	65	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	581	584	parallel
Strand 3	B	551	557	anti-parallel
Strand 4	B	126	131	anti-parallel
Strand 5	B	535	541	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	561	563	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	165	first strand
Strand 2	B	511	518	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	344	347	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	258	first strand
Strand 2	B	172	178	anti-parallel
Strand 3	B	208	214	anti-parallel
Strand 4	B	294	299	anti-parallel
Strand 5	B	281	286	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	204	205	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	273	276	parallel
Strand 4	B	266	268	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	314	first strand
Strand 2	B	356	362	anti-parallel
Strand 3	B	371	374	anti-parallel
Strand 4	B	398	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FB5