Analysis of interatomic Contacts of Structural Units in PDB entry:
5FB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FB8 entry

There are 3 chains in PDB entry 5FB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 26CYS 243
B
 GLU 21SER 243
C
 GLU 27SER 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5FB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 112Right-handed 310
Helix 2
AA2
A
150 155Right-handed alpha
Helix 3
AA3
A
212 218Right-handed alpha
Helix 4
AA4
B
48 52Right-handed 310
Helix 5
AA5
B
82 85Right-handed 310
Helix 6
AA6
B
94 96Right-handed 310
Helix 7
AA7
B
107 111Right-handed 310
Helix 8
AA8
B
121 125Right-handed 310
Helix 9
AA9
B
184 186Right-handed 310
Helix 10
AB1
B
215 219Right-handed 310
Helix 11
AB2
B
229 232Right-handed 310
Helix 12
AB3
C
94 105Right-handed alpha
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There are 14 sheets in PDB entry 5FB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
91 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
131 136parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
62 67anti-parallel
Strand 5
A
74 78anti-parallel
Strand 6
A
82 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
131 136parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
126 127anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
59 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
158 168anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
188 192anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
220 226anti-parallel
Strand 4
A
234 239anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
38 45anti-parallel
Strand 3
B
98 103anti-parallel
Strand 4
B
88 93anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
135 139parallel
Strand 3
B
112 119anti-parallel
Strand 4
B
53 60anti-parallel
Strand 5
B
64 71anti-parallel
Strand 6
B
78 80anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
135 139parallel
Strand 3
B
112 119anti-parallel
Strand 4
B
130 131anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
204 213anti-parallel
Strand 4
B
191 193anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
163 173anti-parallel
Strand 3
B
204 213anti-parallel
Strand 4
B
197 198anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
223 228anti-parallel
Strand 3
B
233 238anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 37first strand
Strand 2
C
108 117anti-parallel
Strand 3
C
81 85anti-parallel
Strand 4
C
88 89anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 52first strand
Strand 2
C
55 64anti-parallel
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