Analysis of interatomic Contacts of Structural Units in PDB entry:
5FBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FBB entry

There are 2 chains in PDB entry 5FBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 21SER 287
B
 TRP 21SER 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5FBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 37Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
62 68Right-handed alpha
Helix 5
AA5
A
73 81Right-handed 310
Helix 6
AA6
A
95 100Right-handed alpha
Helix 7
AA7
A
105 120Right-handed alpha
Helix 8
AA8
A
125 141Right-handed alpha
Helix 9
AA9
A
142 147Right-handed 310
Helix 10
AB1
A
148 154Right-handed alpha
Helix 11
AB2
A
167 173Right-handed alpha
Helix 12
AB3
A
173 181Right-handed alpha
Helix 13
AB4
A
184 201Right-handed alpha
Helix 14
AB5
A
207 212Right-handed alpha
Helix 15
AB6
A
219 238Right-handed alpha
Helix 16
AB7
A
243 250Right-handed alpha
Helix 17
AB8
A
254 283Right-handed alpha
Helix 18
AB9
B
22 37Right-handed alpha
Helix 19
AC1
B
38 50Right-handed alpha
Helix 20
AC2
B
57 61Right-handed 310
Helix 21
AC3
B
62 68Right-handed alpha
Helix 22
AC4
B
73 81Right-handed 310
Helix 23
AC5
B
95 100Right-handed alpha
Helix 24
AC6
B
105 120Right-handed alpha
Helix 25
AC7
B
125 141Right-handed alpha
Helix 26
AC8
B
142 147Right-handed 310
Helix 27
AC9
B
148 153Right-handed alpha
Helix 28
AD1
B
167 173Right-handed alpha
Helix 29
AD2
B
173 181Right-handed alpha
Helix 30
AD3
B
184 201Right-handed alpha
Helix 31
AD4
B
207 212Right-handed alpha
Helix 32
AD5
B
219 238Right-handed alpha
Helix 33
AD6
B
242 250Right-handed alpha
Helix 34
AD7
B
254 285Right-handed alpha
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There are 2 sheets in PDB entry 5FBB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
163 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il