Analysis of interatomic Contacts of Structural Units in PDB entry:
5FBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FBY entry

There are 2 chains in PDB entry 5FBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1683LYS 2220
B
 HIS 10PRO 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5FBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1692 1706Right-handed alpha
Helix 2
AA2
A
1707 1710Right-handed 310
Helix 3
AA3
A
1763 1784Right-handed alpha
Helix 4
AA4
A
1784 1791Right-handed alpha
Helix 5
AA5
A
1793 1819Right-handed alpha
Helix 6
AA6
A
1820 1828Right-handed 310
Helix 7
AA7
A
1833 1852Right-handed alpha
Helix 8
AA8
A
1876 1885Right-handed alpha
Helix 9
AA9
A
1896 1914Right-handed alpha
Helix 10
AB1
A
1919 1923Right-handed 310
Helix 11
AB2
A
1924 1946Right-handed alpha
Helix 12
AB3
A
1967 1971Right-handed 310
Helix 13
AB4
A
1984 1994Right-handed alpha
Helix 14
AB5
A
2011 2016Right-handed 310
Helix 15
AB6
A
2034 2049Right-handed alpha
Helix 16
AB7
A
2049 2054Right-handed alpha
Helix 17
AB8
A
2064 2075Right-handed alpha
Helix 18
AB9
A
2091 2097Right-handed alpha
Helix 19
AC1
A
2125 2134Right-handed alpha
Helix 20
AC2
A
2146 2161Right-handed alpha
Helix 21
AC3
A
2184 2193Right-handed alpha
Helix 22
AC4
A
2194 2196Right-handed 310
Helix 23
AC5
A
2202 2204Right-handed 310
Helix 24
AC6
B
13 18Right-handed 310
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There are 3 sheets in PDB entry 5FBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1740 1745first strand
Strand 2
A
1727 1733anti-parallel
Strand 3
A
1714 1721anti-parallel
Strand 4
A
1954 1959parallel
Strand 5
A
1979 1981parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2017 2020first strand
Strand 2
A
2213 2216parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2056 2059first strand
Strand 2
A
2025 2028parallel
Strand 3
A
2077 2081parallel
Strand 4
A
2104 2107parallel
Strand 5
A
2137 2141parallel
Strand 6
A
2206 2210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il