Analysis of interatomic Contacts of Structural Units in PDB entry:
5FBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FBZ entry

There are 5 chains in PDB entry 5FBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	HIS 433
B	ARG 17	GLY 83
C	ASP 2	HIS 433
D	ARG 17	GLY 83
E	LYS 280	LEU 284

There are 24 helices in PDB entry 5FBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	9	18	Right-handed alpha
Helix 3	AA3	A	67	78	Right-handed alpha
Helix 4	AA4	A	109	120	Right-handed alpha
Helix 5	AA5	A	138	151	Right-handed alpha
Helix 6	AA6	A	188	196	Right-handed 310
Helix 7	AA7	A	235	239	Right-handed 310
Helix 8	AA8	A	252	275	Right-handed alpha
Helix 9	AA9	A	280	292	Right-handed alpha
Helix 10	AB1	A	310	316	Right-handed alpha
Helix 11	AB2	B	24	28	Right-handed 310
Helix 12	AB3	B	31	43	Right-handed alpha
Helix 13	AB4	C	2	8	Right-handed alpha
Helix 14	AB5	C	9	18	Right-handed alpha
Helix 15	AB6	C	67	78	Right-handed alpha
Helix 16	AB7	C	109	120	Right-handed alpha
Helix 17	AB8	C	138	151	Right-handed alpha
Helix 18	AB9	C	188	196	Right-handed 310
Helix 19	AC1	C	235	239	Right-handed 310
Helix 20	AC2	C	252	275	Right-handed alpha
Helix 21	AC3	C	280	292	Right-handed alpha
Helix 22	AC4	C	310	316	Right-handed alpha
Helix 23	AC5	D	24	28	Right-handed 310
Helix 24	AC6	D	31	43	Right-handed alpha

There are 12 sheets in PDB entry 5FBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	90	95	parallel
Strand 3	A	25	30	parallel
Strand 4	A	124	127	parallel
Strand 5	A	154	158	parallel
Strand 6	A	179	184	parallel
Strand 7	A	219	222	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	B	57	58	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	247	250	anti-parallel
Strand 3	A	241	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	344	349	anti-parallel
Strand 4	A	398	403	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	338	first strand
Strand 2	A	409	419	anti-parallel
Strand 3	A	366	372	anti-parallel
Strand 4	A	378	380	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	65	70	parallel
Strand 3	B	81	82	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	90	95	parallel
Strand 3	C	25	30	parallel
Strand 4	C	124	127	parallel
Strand 5	C	154	158	parallel
Strand 6	C	179	184	parallel
Strand 7	C	219	222	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	D	57	58	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	247	250	anti-parallel
Strand 3	C	241	242	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	321	first strand
Strand 2	C	428	432	anti-parallel
Strand 3	C	344	349	anti-parallel
Strand 4	C	398	403	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	409	419	anti-parallel
Strand 3	C	366	372	anti-parallel
Strand 4	C	378	380	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	65	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FBZ