Analysis of interatomic Contacts of Structural Units in PDB entry:
5FCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FCD entry

There are 4 chains in PDB entry 5FCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 UNK -1UNK 3
E
 UNK -3UNK 2
A
 ASP 29LYS 267
B
 ASN 30LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5FCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
62 73Right-handed alpha
Helix 3
AA3
A
82 96Right-handed alpha
Helix 4
AA4
A
126 130Right-handed 310
Helix 5
AA5
A
133 144Right-handed alpha
Helix 6
AA6
A
163 175Right-handed alpha
Helix 7
AA7
A
183 193Right-handed alpha
Helix 8
AA8
A
209 224Right-handed alpha
Helix 9
AA9
A
237 254Right-handed alpha
Helix 10
AB1
B
34 47Right-handed alpha
Helix 11
AB2
B
62 73Right-handed alpha
Helix 12
AB3
B
82 96Right-handed alpha
Helix 13
AB4
B
126 130Right-handed 310
Helix 14
AB5
B
133 144Right-handed alpha
Helix 15
AB6
B
163 175Right-handed alpha
Helix 16
AB7
B
183 193Right-handed alpha
Helix 17
AB8
B
209 224Right-handed alpha
Helix 18
AB9
B
237 254Right-handed alpha
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There are 2 sheets in PDB entry 5FCD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
75 80parallel
Strand 3
A
53 57parallel
Strand 4
A
119 125parallel
Strand 5
A
145 158parallel
Strand 6
A
257 266anti-parallel
Strand 7
A
195 204anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
75 80parallel
Strand 3
B
53 57parallel
Strand 4
B
119 125parallel
Strand 5
B
145 158parallel
Strand 6
B
257 266anti-parallel
Strand 7
B
195 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il