Analysis of interatomic Contacts of Structural Units in PDB entry:
5FCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FCF entry

There are 3 chains in PDB entry 5FCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 399
B
 THR 3ALA 399
C
 GLY 1GLY 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5FCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed alpha
Helix 2
AA2
A
28 47Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
92 100Right-handed alpha
Helix 5
AA5
A
114 126Right-handed alpha
Helix 6
AA6
A
138 147Right-handed alpha
Helix 7
AA7
A
156 165Right-handed alpha
Helix 8
AA8
A
168 193Right-handed alpha
Helix 9
AA9
A
198 214Right-handed alpha
Helix 10
AB1
A
228 232Right-handed 310
Helix 11
AB2
A
273 293Right-handed alpha
Helix 12
AB3
A
299 314Right-handed alpha
Helix 13
AB4
B
9 16Right-handed alpha
Helix 14
AB5
B
28 46Right-handed alpha
Helix 15
AB6
B
56 64Right-handed alpha
Helix 16
AB7
B
92 100Right-handed alpha
Helix 17
AB8
B
114 126Right-handed alpha
Helix 18
AB9
B
138 147Right-handed alpha
Helix 19
AC1
B
156 165Right-handed alpha
Helix 20
AC2
B
168 193Right-handed alpha
Helix 21
AC3
B
198 214Right-handed alpha
Helix 22
AC4
B
228 232Right-handed 310
Helix 23
AC5
B
273 293Right-handed alpha
Helix 24
AC6
B
299 314Right-handed alpha
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There are 12 sheets in PDB entry 5FCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
85 89parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
50 54anti-parallel
Strand 5
A
131 133parallel
Strand 6
A
153 155parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 226first strand
Strand 2
A
247 253anti-parallel
Strand 3
A
263 268anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
259 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
339 343anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
384 386anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
369 371anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
85 89parallel
Strand 3
B
75 79anti-parallel
Strand 4
B
50 54anti-parallel
Strand 5
B
131 133parallel
Strand 6
B
153 155parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 226first strand
Strand 2
B
246 253anti-parallel
Strand 3
B
263 269anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
259 260anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
339 343anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 359first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
384 386anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
369 371anti-parallel
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