Analysis of interatomic Contacts of Structural Units in PDB entry:
5FD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FD5 entry

There are 5 chains in PDB entry 5FD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 138
B
 ASP 3LYS 138
C
 VAL 4LYS 138
D
 ALA 5LEU 137
E
 THR 7LYS 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5FD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
20 33Right-handed alpha
Helix 3
AA3
A
38 50Right-handed alpha
Helix 4
AA4
A
54 68Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
B
7 15Right-handed alpha
Helix 7
AA7
B
20 33Right-handed alpha
Helix 8
AA8
B
38 50Right-handed alpha
Helix 9
AA9
B
54 68Right-handed alpha
Helix 10
AB1
B
107 121Right-handed alpha
Helix 11
AB2
C
7 15Right-handed alpha
Helix 12
AB3
C
20 33Right-handed alpha
Helix 13
AB4
C
38 50Right-handed alpha
Helix 14
AB5
C
54 68Right-handed alpha
Helix 15
AB6
C
107 121Right-handed alpha
Helix 16
AB7
D
7 15Right-handed alpha
Helix 17
AB8
D
20 33Right-handed alpha
Helix 18
AB9
D
38 50Right-handed alpha
Helix 19
AC1
D
54 68Right-handed alpha
Helix 20
AC2
D
107 121Right-handed alpha
Helix 21
AC3
E
8 16Right-handed alpha
Helix 22
AC4
E
20 33Right-handed alpha
Helix 23
AC5
E
38 50Right-handed alpha
Helix 24
AC6
E
54 68Right-handed alpha
Helix 25
AC7
E
107 121Right-handed alpha
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There are 8 sheets in PDB entry 5FD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
81 85anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
123 136parallel
Strand 4
D
123 136anti-parallel
Strand 5
D
92 96parallel
Strand 6
D
101 105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
81 85anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
131 134parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 75first strand
Strand 2
C
81 85anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 105first strand
Strand 2
C
92 96anti-parallel
Strand 3
C
123 136parallel
Strand 4
E
123 136anti-parallel
Strand 5
E
92 96parallel
Strand 6
E
101 105anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 75first strand
Strand 2
D
81 85anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 75first strand
Strand 2
E
81 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il