Analysis of interatomic Contacts of Structural Units in PDB entry:
5FD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FD8 entry

There are 2 chains in PDB entry 5FD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1HIS 328
B
 ASN -1GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5FD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed 310
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
59 73Right-handed alpha
Helix 4
AA4
A
87 95Right-handed 310
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
110 112Right-handed 310
Helix 7
AA7
A
113 125Right-handed alpha
Helix 8
AA8
A
134 139Right-handed 310
Helix 9
AA9
A
143 156Right-handed alpha
Helix 10
AB1
A
205 209Right-handed alpha
Helix 11
AB2
A
210 212Right-handed 310
Helix 12
AB3
A
233 235Right-handed 310
Helix 13
AB4
A
236 250Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
266 270Right-handed 310
Helix 16
AB7
A
272 282Right-handed alpha
Helix 17
AB8
A
283 287Right-handed 310
Helix 18
AB9
B
20 24Right-handed 310
Helix 19
AC1
B
25 39Right-handed alpha
Helix 20
AC2
B
59 73Right-handed alpha
Helix 21
AC3
B
87 92Right-handed 310
Helix 22
AC4
B
96 103Right-handed alpha
Helix 23
AC5
B
110 112Right-handed 310
Helix 24
AC6
B
113 125Right-handed alpha
Helix 25
AC7
B
134 139Right-handed 310
Helix 26
AC8
B
143 156Right-handed alpha
Helix 27
AC9
B
205 210Right-handed alpha
Helix 28
AD1
B
233 235Right-handed 310
Helix 29
AD2
B
236 250Right-handed alpha
Helix 30
AD3
B
253 257Right-handed 310
Helix 31
AD4
B
266 270Right-handed 310
Helix 32
AD5
B
272 282Right-handed alpha
Helix 33
AD6
B
283 289Right-handed 310
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There are 7 sheets in PDB entry 5FD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
11 15parallel
Strand 3
A
76 81parallel
Strand 4
A
106 109parallel
Strand 5
A
128 130parallel
Strand 6
A
306 308anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
322 327anti-parallel
Strand 3
A
311 316anti-parallel
Strand 4
A
194 204anti-parallel
Strand 5
A
223 228parallel
Strand 6
A
259 263parallel
Strand 7
A
291 295parallel
Strand 8
A
189 192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
183 184anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
11 15parallel
Strand 3
B
76 81parallel
Strand 4
B
106 108parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
306 308anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
322 327anti-parallel
Strand 3
B
311 316anti-parallel
Strand 4
B
194 204anti-parallel
Strand 5
B
223 228parallel
Strand 6
B
259 263parallel
Strand 7
B
291 295parallel
Strand 8
B
189 192anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
182 184anti-parallel
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