Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDF entry

There are 6 chains in PDB entry 5FDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4GLU 323
B
 PHE 4GLU 323
C
 PHE 4GLU 323
D
 PHE 4GLU 323
E
 PHE 4GLU 323
F
 PHE 4GLU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 5FDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
64 66Right-handed 310
Helix 4
AA4
A
98 102Right-handed 310
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
155 173Right-handed alpha
Helix 7
AA7
A
188 201Right-handed alpha
Helix 8
AA8
A
216 224Right-handed alpha
Helix 9
AA9
A
228 239Right-handed alpha
Helix 10
AB1
A
242 252Right-handed alpha
Helix 11
AB2
A
254 260Right-handed alpha
Helix 12
AB3
A
278 289Right-handed alpha
Helix 13
AB4
A
306 323Right-handed alpha
Helix 14
AB5
B
7 12Right-handed alpha
Helix 15
AB6
B
23 37Right-handed alpha
Helix 16
AB7
B
64 66Right-handed 310
Helix 17
AB8
B
98 102Right-handed 310
Helix 18
AB9
B
103 108Right-handed alpha
Helix 19
AC1
B
151 154Right-handed 310
Helix 20
AC2
B
155 174Right-handed alpha
Helix 21
AC3
B
188 201Right-handed alpha
Helix 22
AC4
B
216 224Right-handed alpha
Helix 23
AC5
B
228 239Right-handed alpha
Helix 24
AC6
B
242 252Right-handed alpha
Helix 25
AC7
B
254 260Right-handed alpha
Helix 26
AC8
B
278 289Right-handed alpha
Helix 27
AC9
B
306 323Right-handed alpha
Helix 28
AD1
C
7 12Right-handed alpha
Helix 29
AD2
C
23 37Right-handed alpha
Helix 30
AD3
C
64 66Right-handed 310
Helix 31
AD4
C
98 102Right-handed 310
Helix 32
AD5
C
103 108Right-handed alpha
Helix 33
AD6
C
151 154Right-handed 310
Helix 34
AD7
C
155 173Right-handed alpha
Helix 35
AD8
C
188 201Right-handed alpha
Helix 36
AD9
C
216 224Right-handed alpha
Helix 37
AE1
C
228 239Right-handed alpha
Helix 38
AE2
C
242 252Right-handed alpha
Helix 39
AE3
C
254 260Right-handed alpha
Helix 40
AE4
C
278 289Right-handed alpha
Helix 41
AE5
C
306 323Right-handed alpha
Helix 42
AE6
D
7 12Right-handed alpha
Helix 43
AE7
D
23 37Right-handed alpha
Helix 44
AE8
D
64 66Right-handed 310
Helix 45
AE9
D
98 102Right-handed 310
Helix 46
AF1
D
103 108Right-handed alpha
Helix 47
AF2
D
155 173Right-handed alpha
Helix 48
AF3
D
188 201Right-handed alpha
Helix 49
AF4
D
216 224Right-handed alpha
Helix 50
AF5
D
228 239Right-handed alpha
Helix 51
AF6
D
242 252Right-handed alpha
Helix 52
AF7
D
254 260Right-handed alpha
Helix 53
AF8
D
278 289Right-handed alpha
Helix 54
AF9
D
306 323Right-handed alpha
Helix 55
AG1
E
7 13Right-handed alpha
Helix 56
AG2
E
23 37Right-handed alpha
Helix 57
AG3
E
64 66Right-handed 310
Helix 58
AG4
E
98 102Right-handed 310
Helix 59
AG5
E
103 108Right-handed alpha
Helix 60
AG6
E
155 173Right-handed alpha
Helix 61
AG7
E
188 201Right-handed alpha
Helix 62
AG8
E
216 224Right-handed alpha
Helix 63
AG9
E
228 239Right-handed alpha
Helix 64
AH1
E
242 252Right-handed alpha
Helix 65
AH2
E
254 260Right-handed alpha
Helix 66
AH3
E
278 289Right-handed alpha
Helix 67
AH4
E
306 323Right-handed alpha
Helix 68
AH5
F
7 13Right-handed alpha
Helix 69
AH6
F
23 37Right-handed alpha
Helix 70
AH7
F
64 66Right-handed 310
Helix 71
AH8
F
98 102Right-handed 310
Helix 72
AH9
F
103 108Right-handed alpha
Helix 73
AI1
F
155 173Right-handed alpha
Helix 74
AI2
F
188 201Right-handed alpha
Helix 75
AI3
F
216 224Right-handed alpha
Helix 76
AI4
F
229 239Right-handed alpha
Helix 77
AI5
F
242 252Right-handed alpha
Helix 78
AI6
F
254 260Right-handed alpha
Helix 79
AI7
F
278 289Right-handed alpha
Helix 80
AI8
F
306 323Right-handed alpha
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There are 6 sheets in PDB entry 5FDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
111 115anti-parallel
Strand 5
A
83 89parallel
Strand 6
A
177 187parallel
Strand 7
A
206 210parallel
Strand 8
A
266 271parallel
Strand 9
A
293 298parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
54 62anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
111 115anti-parallel
Strand 5
B
83 88parallel
Strand 6
B
177 187parallel
Strand 7
B
206 210parallel
Strand 8
B
266 271parallel
Strand 9
B
293 298parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
54 62anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
111 115anti-parallel
Strand 5
C
83 88parallel
Strand 6
C
177 187parallel
Strand 7
C
206 210parallel
Strand 8
C
266 271parallel
Strand 9
C
293 298parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 46first strand
Strand 2
D
54 62anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
111 115anti-parallel
Strand 5
D
83 88parallel
Strand 6
D
177 187parallel
Strand 7
D
206 210parallel
Strand 8
D
266 271parallel
Strand 9
D
293 298parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 46first strand
Strand 2
E
54 62anti-parallel
Strand 3
E
68 76anti-parallel
Strand 4
E
111 115anti-parallel
Strand 5
E
83 88parallel
Strand 6
E
177 187parallel
Strand 7
E
206 210parallel
Strand 8
E
266 271parallel
Strand 9
E
293 298parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 46first strand
Strand 2
F
54 62anti-parallel
Strand 3
F
68 76anti-parallel
Strand 4
F
111 115anti-parallel
Strand 5
F
83 88parallel
Strand 6
F
177 187parallel
Strand 7
F
206 210parallel
Strand 8
F
266 271parallel
Strand 9
F
293 298parallel
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