Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDH entry

There are 4 chains in PDB entry 5FDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 22PHE 72
A
 ILE 74GLU 267
B
 MET 22PHE 72
B
 ILE 74GLU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5FDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 37Right-handed alpha
Helix 2
AA2
A
58 63Right-handed alpha
Helix 3
AA3
A
68 71Right-handed 310
Helix 4
AA4
A
72 83Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
110 117Right-handed alpha
Helix 7
AA7
A
119 143Right-handed alpha
Helix 8
AA8
A
155 160Right-handed alpha
Helix 9
AA9
A
165 178Right-handed alpha
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
248 261Right-handed alpha
Helix 12
AB3
B
31 37Right-handed alpha
Helix 13
AB4
B
58 63Right-handed alpha
Helix 14
AB5
B
68 71Right-handed 310
Helix 15
AB6
B
72 83Right-handed alpha
Helix 16
AB7
B
102 106Right-handed 310
Helix 17
AB8
B
110 117Right-handed alpha
Helix 18
AB9
B
119 143Right-handed alpha
Helix 19
AC1
B
155 160Right-handed alpha
Helix 20
AC2
B
165 178Right-handed alpha
Helix 21
AC3
B
184 195Right-handed alpha
Helix 22
AC4
B
248 261Right-handed alpha
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There are 3 sheets in PDB entry 5FDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
53 56parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
232 241anti-parallel
Strand 5
A
214 227anti-parallel
Strand 6
A
204 212anti-parallel
Strand 7
A
196 199anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
53 56parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
232 241anti-parallel
Strand 5
B
214 227anti-parallel
Strand 6
B
204 212anti-parallel
Strand 7
B
196 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
162 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il