Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FDK entry

There are 8 chains in PDB entry 5FDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 23	SER 199
B	THR 34	SER 199
C	PRO 26	SER 199
D	MET 1	SER 199
E	A 1	T 12
F	A 1	T 12
G	C 2	T 12
H	A 1	G 11

There are 23 helices in PDB entry 5FDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	48	Right-handed alpha
Helix 2	AA2	A	114	116	Right-handed 310
Helix 3	AA3	A	117	130	Right-handed alpha
Helix 4	AA4	A	149	162	Right-handed alpha
Helix 5	AA5	A	169	176	Right-handed alpha
Helix 6	AA6	A	189	198	Right-handed alpha
Helix 7	AA7	B	35	49	Right-handed alpha
Helix 8	AA8	B	117	130	Right-handed alpha
Helix 9	AA9	B	149	161	Right-handed alpha
Helix 10	AB1	B	169	176	Right-handed alpha
Helix 11	AB2	B	188	199	Right-handed alpha
Helix 12	AB3	C	35	49	Right-handed alpha
Helix 13	AB4	C	114	116	Right-handed 310
Helix 14	AB5	C	117	129	Right-handed alpha
Helix 15	AB6	C	148	161	Right-handed alpha
Helix 16	AB7	C	171	176	Right-handed alpha
Helix 17	AB8	C	189	197	Right-handed alpha
Helix 18	AB9	D	35	49	Right-handed alpha
Helix 19	AC1	D	112	116	Right-handed 310
Helix 20	AC2	D	117	130	Right-handed alpha
Helix 21	AC3	D	149	159	Right-handed alpha
Helix 22	AC4	D	168	176	Right-handed alpha
Helix 23	AC5	D	188	198	Right-handed alpha

There are 14 sheets in PDB entry 5FDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	89	93	anti-parallel
Strand 3	A	96	104	anti-parallel
Strand 4	A	133	139	parallel
Strand 5	A	144	148	anti-parallel
Strand 6	A	177	178	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	78	81	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	166	168	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	89	93	anti-parallel
Strand 3	B	96	99	anti-parallel
Strand 4	B	133	140	parallel
Strand 5	B	102	104	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	89	93	anti-parallel
Strand 3	B	96	99	anti-parallel
Strand 4	B	133	140	parallel
Strand 5	B	143	148	anti-parallel
Strand 6	B	177	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	75	79	anti-parallel
Strand 3	D	75	81	anti-parallel
Strand 4	D	61	67	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	166	168	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	89	93	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	133	134	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	75	81	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	137	138	parallel
Strand 3	C	145	146	anti-parallel
Strand 4	C	177	178	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	166	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	187	188	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	89	93	anti-parallel
Strand 3	D	96	99	anti-parallel
Strand 4	D	133	138	parallel
Strand 5	D	102	103	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	89	93	anti-parallel
Strand 3	D	96	99	anti-parallel
Strand 4	D	133	138	parallel
Strand 5	D	145	148	anti-parallel
Strand 6	D	177	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDK