Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDN entry

There are 2 chains in PDB entry 5FDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15GLY 968
B
 ASP 13GLY 968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 95 helices in PDB entry 5FDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 50Right-handed alpha
Helix 2
AA2
A
50 71Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
87 116Right-handed alpha
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
126 132Right-handed 310
Helix 7
AA7
A
138 151Right-handed alpha
Helix 8
AA8
A
153 163Right-handed alpha
Helix 9
AA9
A
179 197Right-handed alpha
Helix 10
AB1
A
202 222Right-handed alpha
Helix 11
AB2
A
232 241Right-handed alpha
Helix 12
AB3
A
242 247Right-handed alpha
Helix 13
AB4
A
247 265Right-handed alpha
Helix 14
AB5
A
296 326Right-handed alpha
Helix 15
AB6
A
332 341Right-handed alpha
Helix 16
AB7
A
365 392Right-handed alpha
Helix 17
AB8
A
397 401Right-handed 310
Helix 18
AB9
A
404 422Right-handed alpha
Helix 19
AC1
A
424 429Right-handed alpha
Helix 20
AC2
A
430 443Right-handed alpha
Helix 21
AC3
A
455 469Right-handed alpha
Helix 22
AC4
A
474 478Right-handed 310
Helix 23
AC5
A
479 493Right-handed alpha
Helix 24
AC6
A
505 521Right-handed alpha
Helix 25
AC7
A
522 524Right-handed 310
Helix 26
AC8
A
536 550Right-handed alpha
Helix 27
AC9
A
564 581Right-handed alpha
Helix 28
AD1
A
581 589Right-handed alpha
Helix 29
AD2
A
597 606Right-handed alpha
Helix 30
AD3
A
606 629Right-handed alpha
Helix 31
AD4
A
640 644Right-handed 310
Helix 32
AD5
A
647 655Right-handed alpha
Helix 33
AD6
A
670 679Right-handed alpha
Helix 34
AD7
A
680 701Right-handed alpha
Helix 35
AD8
A
707 730Right-handed alpha
Helix 36
AD9
A
734 743Right-handed alpha
Helix 37
AE1
A
744 751Right-handed alpha
Helix 38
AE2
A
770 781Right-handed alpha
Helix 39
AE3
A
784 789Right-handed alpha
Helix 40
AE4
A
790 802Right-handed alpha
Helix 41
AE5
A
804 816Right-handed alpha
Helix 42
AE6
A
816 832Right-handed alpha
Helix 43
AE7
A
834 846Right-handed alpha
Helix 44
AE8
A
847 849Right-handed 310
Helix 45
AE9
A
850 873Right-handed alpha
Helix 46
AF1
A
881 911Right-handed alpha
Helix 47
AF2
A
949 965Right-handed alpha
Helix 48
AF3
B
15 20Right-handed alpha
Helix 49
AF4
B
29 50Right-handed alpha
Helix 50
AF5
B
50 71Right-handed alpha
Helix 51
AF6
B
72 85Right-handed alpha
Helix 52
AF7
B
87 116Right-handed alpha
Helix 53
AF8
B
119 123Right-handed 310
Helix 54
AF9
B
126 132Right-handed 310
Helix 55
AG1
B
138 151Right-handed alpha
Helix 56
AG2
B
153 163Right-handed alpha
Helix 57
AG3
B
179 197Right-handed alpha
Helix 58
AG4
B
202 222Right-handed alpha
Helix 59
AG5
B
233 241Right-handed alpha
Helix 60
AG6
B
242 247Right-handed alpha
Helix 61
AG7
B
247 266Right-handed alpha
Helix 62
AG8
B
296 326Right-handed alpha
Helix 63
AG9
B
332 342Right-handed alpha
Helix 64
AH1
B
365 392Right-handed alpha
Helix 65
AH2
B
397 401Right-handed 310
Helix 66
AH3
B
404 422Right-handed alpha
Helix 67
AH4
B
424 429Right-handed alpha
Helix 68
AH5
B
430 443Right-handed alpha
Helix 69
AH6
B
455 469Right-handed alpha
Helix 70
AH7
B
474 478Right-handed 310
Helix 71
AH8
B
479 493Right-handed alpha
Helix 72
AH9
B
505 521Right-handed alpha
Helix 73
AI1
B
522 524Right-handed 310
Helix 74
AI2
B
536 550Right-handed alpha
Helix 75
AI3
B
564 581Right-handed alpha
Helix 76
AI4
B
581 589Right-handed alpha
Helix 77
AI5
B
597 606Right-handed alpha
Helix 78
AI6
B
606 629Right-handed alpha
Helix 79
AI7
B
640 644Right-handed 310
Helix 80
AI8
B
647 655Right-handed alpha
Helix 81
AI9
B
670 679Right-handed alpha
Helix 82
AJ1
B
680 698Right-handed alpha
Helix 83
AJ2
B
707 730Right-handed alpha
Helix 84
AJ3
B
734 743Right-handed alpha
Helix 85
AJ4
B
744 749Right-handed alpha
Helix 86
AJ5
B
770 781Right-handed alpha
Helix 87
AJ6
B
784 789Right-handed alpha
Helix 88
AJ7
B
790 802Right-handed alpha
Helix 89
AJ8
B
804 816Right-handed alpha
Helix 90
AJ9
B
816 832Right-handed alpha
Helix 91
AK1
B
834 846Right-handed alpha
Helix 92
AK2
B
847 849Right-handed 310
Helix 93
AK3
B
850 873Right-handed alpha
Helix 94
AK4
B
881 911Right-handed alpha
Helix 95
AK5
B
949 965Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5FDN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
279 283parallel
Strand 3
A
448 454parallel
Strand 4
A
526 532parallel
Strand 5
A
557 562parallel
Strand 6
A
591 596parallel
Strand 7
A
631 636parallel
Strand 8
A
664 669parallel
Strand 9
A
165 170parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
279 283parallel
Strand 3
B
448 454parallel
Strand 4
B
526 532parallel
Strand 5
B
557 562parallel
Strand 6
B
591 596parallel
Strand 7
B
631 636parallel
Strand 8
B
664 669parallel
Strand 9
B
165 170parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il