Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDP entry

There is 1 chain in PDB entry 5FDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 604THR 912
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5FDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
606 610Right-handed 310
Helix 2
AA2
A
662 677Right-handed alpha
Helix 3
AA3
A
708 715Right-handed alpha
Helix 4
AA4
A
739 760Right-handed alpha
Helix 5
AA5
A
768 770Right-handed 310
Helix 6
AA6
A
776 778Right-handed 310
Helix 7
AA7
A
789 796Right-handed 310
Helix 8
AA8
A
806 810Right-handed 310
Helix 9
AA9
A
811 818Right-handed alpha
Helix 10
AB1
A
821 838Right-handed alpha
Helix 11
AB2
A
849 863Right-handed alpha
Helix 12
AB3
A
877 887Right-handed alpha
Helix 13
AB4
A
891 895Right-handed 310
Helix 14
AB5
A
897 908Right-handed alpha
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There are 4 sheets in PDB entry 5FDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 618first strand
Strand 2
A
622 629anti-parallel
Strand 3
A
650 657anti-parallel
Strand 4
A
698 702anti-parallel
Strand 5
A
687 691anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
737 738parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
780 782anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 798first strand
Strand 2
A
804 805anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il