Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FDQ entry

There are 2 chains in PDB entry 5FDQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 33	VAL 582
B	HIS 33	VAL 582

There are 64 helices in PDB entry 5FDQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	83	Right-handed alpha
Helix 2	AA2	A	85	94	Right-handed alpha
Helix 3	AA3	A	96	105	Right-handed alpha
Helix 4	AA4	A	105	122	Right-handed alpha
Helix 5	AA5	A	138	144	Right-handed alpha
Helix 6	AA6	A	173	182	Right-handed alpha
Helix 7	AA7	A	195	207	Right-handed alpha
Helix 8	AA8	A	230	235	Right-handed alpha
Helix 9	AA9	A	237	245	Right-handed alpha
Helix 10	AB1	A	265	270	Right-handed alpha
Helix 11	AB2	A	280	284	Right-handed 310
Helix 12	AB3	A	291	294	Right-handed 310
Helix 13	AB4	A	295	320	Right-handed alpha
Helix 14	AB5	A	324	347	Right-handed alpha
Helix 15	AB6	A	347	354	Right-handed alpha
Helix 16	AB7	A	362	367	Right-handed 310
Helix 17	AB8	A	378	385	Right-handed alpha
Helix 18	AB9	A	386	391	Right-handed 310
Helix 19	AC1	A	403	408	Right-handed alpha
Helix 20	AC2	A	410	429	Right-handed alpha
Helix 21	AC3	A	441	443	Right-handed 310
Helix 22	AC4	A	444	458	Right-handed alpha
Helix 23	AC5	A	462	470	Right-handed alpha
Helix 24	AC6	A	477	483	Right-handed alpha
Helix 25	AC7	A	485	496	Right-handed alpha
Helix 26	AC8	A	497	501	Right-handed 310
Helix 27	AC9	A	502	510	Right-handed alpha
Helix 28	AD1	A	519	536	Right-handed alpha
Helix 29	AD2	A	537	541	Right-handed 310
Helix 30	AD3	A	546	551	Right-handed 310
Helix 31	AD4	A	552	561	Right-handed alpha
Helix 32	AD5	A	563	572	Right-handed alpha
Helix 33	AD6	B	73	83	Right-handed alpha
Helix 34	AD7	B	85	95	Right-handed alpha
Helix 35	AD8	B	96	104	Right-handed alpha
Helix 36	AD9	B	105	122	Right-handed alpha
Helix 37	AE1	B	138	144	Right-handed alpha
Helix 38	AE2	B	173	182	Right-handed alpha
Helix 39	AE3	B	195	207	Right-handed alpha
Helix 40	AE4	B	230	235	Right-handed alpha
Helix 41	AE5	B	237	245	Right-handed alpha
Helix 42	AE6	B	265	270	Right-handed alpha
Helix 43	AE7	B	280	284	Right-handed 310
Helix 44	AE8	B	291	294	Right-handed 310
Helix 45	AE9	B	295	320	Right-handed alpha
Helix 46	AF1	B	324	347	Right-handed alpha
Helix 47	AF2	B	347	354	Right-handed alpha
Helix 48	AF3	B	362	367	Right-handed 310
Helix 49	AF4	B	378	385	Right-handed alpha
Helix 50	AF5	B	386	391	Right-handed 310
Helix 51	AF6	B	403	408	Right-handed alpha
Helix 52	AF7	B	411	429	Right-handed alpha
Helix 53	AF8	B	441	443	Right-handed 310
Helix 54	AF9	B	444	458	Right-handed alpha
Helix 55	AG1	B	462	470	Right-handed alpha
Helix 56	AG2	B	477	483	Right-handed alpha
Helix 57	AG3	B	485	496	Right-handed alpha
Helix 58	AG4	B	497	501	Right-handed 310
Helix 59	AG5	B	502	510	Right-handed alpha
Helix 60	AG6	B	519	536	Right-handed alpha
Helix 61	AG7	B	537	541	Right-handed 310
Helix 62	AG8	B	546	551	Right-handed 310
Helix 63	AG9	B	552	561	Right-handed alpha
Helix 64	AH1	B	563	572	Right-handed alpha

There are 10 sheets in PDB entry 5FDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	55	58	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	71	72	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	149	150	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	260	262	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	400	402	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	54	58	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	71	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	149	150	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	400	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FDQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDQ