Analysis of interatomic Contacts of Structural Units in PDB entry:
5FDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FDR entry

There are 4 chains in PDB entry 5FDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 171GLU 325
B
 ASP 171VAL 321
C
 ASP 172LEU 324
D
 ASP 172VAL 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5FDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 192Right-handed alpha
Helix 2
AA2
A
203 224Right-handed alpha
Helix 3
AA3
A
224 236Right-handed alpha
Helix 4
AA4
A
239 255Right-handed alpha
Helix 5
AA5
A
260 281Right-handed alpha
Helix 6
AA6
A
283 285Right-handed 310
Helix 7
AA7
A
286 309Right-handed alpha
Helix 8
AA8
A
310 320Right-handed alpha
Helix 9
AA9
B
172 192Right-handed alpha
Helix 10
AB1
B
204 224Right-handed alpha
Helix 11
AB2
B
224 236Right-handed alpha
Helix 12
AB3
B
239 245Right-handed alpha
Helix 13
AB4
B
246 255Right-handed alpha
Helix 14
AB5
B
260 281Right-handed alpha
Helix 15
AB6
B
283 285Right-handed 310
Helix 16
AB7
B
286 309Right-handed alpha
Helix 17
AB8
B
310 319Right-handed alpha
Helix 18
AB9
C
173 191Right-handed alpha
Helix 19
AC1
C
204 224Right-handed alpha
Helix 20
AC2
C
224 236Right-handed alpha
Helix 21
AC3
C
239 255Right-handed alpha
Helix 22
AC4
C
260 281Right-handed alpha
Helix 23
AC5
C
283 285Right-handed 310
Helix 24
AC6
C
286 309Right-handed alpha
Helix 25
AC7
C
310 320Right-handed alpha
Helix 26
AC8
D
173 191Right-handed alpha
Helix 27
AC9
D
202 224Right-handed alpha
Helix 28
AD1
D
224 236Right-handed alpha
Helix 29
AD2
D
239 246Right-handed alpha
Helix 30
AD3
D
246 255Right-handed alpha
Helix 31
AD4
D
260 281Right-handed alpha
Helix 32
AD5
D
283 285Right-handed 310
Helix 33
AD6
D
286 309Right-handed alpha
Helix 34
AD7
D
310 320Right-handed alpha
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There are no sheets in PDB entry 5FDR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il