Analysis of interatomic Contacts of Structural Units in PDB entry:
5FEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FEM entry

There are 2 chains in PDB entry 5FEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83HIS 687
B
 PRO 83HIS 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5FEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 105Right-handed alpha
Helix 2
AA2
A
115 117Right-handed 310
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
138 154Right-handed alpha
Helix 5
AA5
A
164 169Right-handed alpha
Helix 6
AA6
A
170 181Right-handed alpha
Helix 7
AA7
A
205 210Right-handed alpha
Helix 8
AA8
A
211 214Right-handed 310
Helix 9
AA9
A
222 224Right-handed 310
Helix 10
AB1
A
225 239Right-handed alpha
Helix 11
AB2
A
251 256Right-handed alpha
Helix 12
AB3
A
264 268Right-handed alpha
Helix 13
AB4
A
278 299Right-handed alpha
Helix 14
AB5
A
308 313Right-handed 310
Helix 15
AB6
A
315 328Right-handed alpha
Helix 16
AB7
A
335 338Right-handed 310
Helix 17
AB8
A
357 367Right-handed alpha
Helix 18
AB9
A
378 383Right-handed alpha
Helix 19
AC1
A
384 388Right-handed 310
Helix 20
AC2
A
389 398Right-handed alpha
Helix 21
AC3
A
409 413Right-handed 310
Helix 22
AC4
A
426 435Right-handed alpha
Helix 23
AC5
A
436 438Right-handed 310
Helix 24
AC6
A
444 458Right-handed alpha
Helix 25
AC7
A
472 486Right-handed alpha
Helix 26
AC8
A
498 508Right-handed alpha
Helix 27
AC9
A
527 539Right-handed alpha
Helix 28
AD1
A
550 557Right-handed alpha
Helix 29
AD2
A
559 567Right-handed alpha
Helix 30
AD3
A
580 591Right-handed alpha
Helix 31
AD4
A
604 612Right-handed alpha
Helix 32
AD5
A
621 623Right-handed 310
Helix 33
AD6
A
624 635Right-handed alpha
Helix 34
AD7
A
668 683Right-handed alpha
Helix 35
AD8
B
93 105Right-handed alpha
Helix 36
AD9
B
115 117Right-handed 310
Helix 37
AE1
B
118 125Right-handed alpha
Helix 38
AE2
B
138 154Right-handed alpha
Helix 39
AE3
B
164 169Right-handed alpha
Helix 40
AE4
B
170 181Right-handed alpha
Helix 41
AE5
B
205 210Right-handed alpha
Helix 42
AE6
B
211 214Right-handed 310
Helix 43
AE7
B
222 224Right-handed 310
Helix 44
AE8
B
225 239Right-handed alpha
Helix 45
AE9
B
251 256Right-handed alpha
Helix 46
AF1
B
265 267Right-handed 310
Helix 47
AF2
B
278 299Right-handed alpha
Helix 48
AF3
B
308 313Right-handed 310
Helix 49
AF4
B
315 328Right-handed alpha
Helix 50
AF5
B
335 338Right-handed 310
Helix 51
AF6
B
357 367Right-handed alpha
Helix 52
AF7
B
378 383Right-handed alpha
Helix 53
AF8
B
384 388Right-handed 310
Helix 54
AF9
B
389 398Right-handed alpha
Helix 55
AG1
B
409 413Right-handed 310
Helix 56
AG2
B
426 435Right-handed alpha
Helix 57
AG3
B
436 438Right-handed 310
Helix 58
AG4
B
444 458Right-handed alpha
Helix 59
AG5
B
472 486Right-handed alpha
Helix 60
AG6
B
498 508Right-handed alpha
Helix 61
AG7
B
527 539Right-handed alpha
Helix 62
AG8
B
550 557Right-handed alpha
Helix 63
AG9
B
559 567Right-handed alpha
Helix 64
AH1
B
580 591Right-handed alpha
Helix 65
AH2
B
604 612Right-handed alpha
Helix 66
AH3
B
621 623Right-handed 310
Helix 67
AH4
B
624 635Right-handed alpha
Helix 68
AH5
B
668 684Right-handed alpha
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There are 8 sheets in PDB entry 5FEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
262 263anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
109 113parallel
Strand 3
A
157 161parallel
Strand 4
A
184 190parallel
Strand 5
A
244 250parallel
Strand 6
A
216 219parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
331 333parallel
Strand 3
A
302 306parallel
Strand 4
A
369 373parallel
Strand 5
A
402 407parallel
Strand 6
A
421 424parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
491 495parallel
Strand 3
A
543 549parallel
Strand 4
A
571 576parallel
Strand 5
A
639 644parallel
Strand 6
A
615 619parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
262 263anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
109 113parallel
Strand 3
B
157 161parallel
Strand 4
B
184 190parallel
Strand 5
B
244 250parallel
Strand 6
B
216 219parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
331 333parallel
Strand 3
B
302 306parallel
Strand 4
B
369 373parallel
Strand 5
B
402 407parallel
Strand 6
B
421 424parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 517first strand
Strand 2
B
491 495parallel
Strand 3
B
543 549parallel
Strand 4
B
571 576parallel
Strand 5
B
639 644parallel
Strand 6
B
615 619parallel
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