Analysis of interatomic Contacts of Structural Units in PDB entry:
5FF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FF5 entry

There are 2 chains in PDB entry 5FF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11LEU 374
B
 VAL 6PHE 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5FF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 48Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
71 85Right-handed alpha
Helix 4
AA4
A
99 106Right-handed alpha
Helix 5
AA5
A
106 117Right-handed alpha
Helix 6
AA6
A
122 132Right-handed alpha
Helix 7
AA7
A
141 154Right-handed alpha
Helix 8
AA8
A
168 174Right-handed 310
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
186 199Right-handed alpha
Helix 11
AB2
A
214 223Right-handed alpha
Helix 12
AB3
A
243 255Right-handed alpha
Helix 13
AB4
A
325 346Right-handed alpha
Helix 14
AB5
B
57 66Right-handed alpha
Helix 15
AB6
B
74 82Right-handed alpha
Helix 16
AB7
B
83 85Right-handed 310
Helix 17
AB8
B
99 106Right-handed alpha
Helix 18
AB9
B
106 117Right-handed alpha
Helix 19
AC1
B
122 132Right-handed alpha
Helix 20
AC2
B
142 154Right-handed alpha
Helix 21
AC3
B
168 172Right-handed 310
Helix 22
AC4
B
179 183Right-handed 310
Helix 23
AC5
B
186 199Right-handed alpha
Helix 24
AC6
B
214 223Right-handed alpha
Helix 25
AC7
B
243 255Right-handed alpha
Helix 26
AC8
B
282 288Right-handed alpha
Helix 27
AC9
B
302 310Right-handed alpha
Helix 28
AD1
B
325 346Right-handed alpha
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There are 5 sheets in PDB entry 5FF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
24 26anti-parallel
Strand 3
A
35 36anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
158 162parallel
Strand 3
A
134 138parallel
Strand 4
A
227 229parallel
Strand 5
A
258 263parallel
Strand 6
A
267 274anti-parallel
Strand 7
A
355 360anti-parallel
Strand 8
A
366 370anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
88 90anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
158 162parallel
Strand 3
B
134 137parallel
Strand 4
B
227 231parallel
Strand 5
B
258 264parallel
Strand 6
B
273 274anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
158 162parallel
Strand 3
B
134 137parallel
Strand 4
B
227 231parallel
Strand 5
B
258 264parallel
Strand 6
B
267 270anti-parallel
Strand 7
B
355 360anti-parallel
Strand 8
B
366 370anti-parallel
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