Analysis of interatomic Contacts of Structural Units in PDB entry:
5FF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FF9 entry

There are 4 chains in PDB entry 5FF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLY 271
B
 MET 15GLY 271
C
 GLU 18ASN 270
D
 LEU 17GLY 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5FF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
35 48Right-handed alpha
Helix 3
AA3
A
58 72Right-handed alpha
Helix 4
AA4
A
85 100Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
123 135Right-handed alpha
Helix 7
AA7
A
135 153Right-handed alpha
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
172 193Right-handed alpha
Helix 10
AB1
A
194 196Right-handed 310
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
237 250Right-handed alpha
Helix 13
AB4
A
251 254Right-handed 310
Helix 14
AB5
A
266 270Right-handed 310
Helix 15
AB6
B
16 21Right-handed alpha
Helix 16
AB7
B
35 48Right-handed alpha
Helix 17
AB8
B
58 72Right-handed alpha
Helix 18
AB9
B
85 100Right-handed alpha
Helix 19
AC1
B
118 122Right-handed 310
Helix 20
AC2
B
123 135Right-handed alpha
Helix 21
AC3
B
135 152Right-handed alpha
Helix 22
AC4
B
162 166Right-handed 310
Helix 23
AC5
B
172 193Right-handed alpha
Helix 24
AC6
B
194 196Right-handed 310
Helix 25
AC7
B
210 212Right-handed 310
Helix 26
AC8
B
213 219Right-handed alpha
Helix 27
AC9
B
219 228Right-handed alpha
Helix 28
AD1
B
237 250Right-handed alpha
Helix 29
AD2
B
251 254Right-handed 310
Helix 30
AD3
C
35 48Right-handed alpha
Helix 31
AD4
C
58 72Right-handed alpha
Helix 32
AD5
C
85 100Right-handed alpha
Helix 33
AD6
C
118 122Right-handed 310
Helix 34
AD7
C
123 135Right-handed alpha
Helix 35
AD8
C
135 153Right-handed alpha
Helix 36
AD9
C
162 166Right-handed 310
Helix 37
AE1
C
172 193Right-handed alpha
Helix 38
AE2
C
194 196Right-handed 310
Helix 39
AE3
C
210 215Right-handed alpha
Helix 40
AE4
C
225 229Right-handed alpha
Helix 41
AE5
C
237 250Right-handed alpha
Helix 42
AE6
C
251 254Right-handed 310
Helix 43
AE7
D
35 48Right-handed alpha
Helix 44
AE8
D
58 72Right-handed alpha
Helix 45
AE9
D
85 100Right-handed alpha
Helix 46
AF1
D
118 122Right-handed 310
Helix 47
AF2
D
123 135Right-handed alpha
Helix 48
AF3
D
135 152Right-handed alpha
Helix 49
AF4
D
162 166Right-handed 310
Helix 50
AF5
D
172 194Right-handed alpha
Helix 51
AF6
D
219 229Right-handed alpha
Helix 52
AF7
D
237 250Right-handed alpha
Helix 53
AF8
D
251 254Right-handed 310
Helix 54
AF9
D
266 270Right-handed 310
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There are 4 sheets in PDB entry 5FF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
51 56parallel
Strand 3
A
27 31parallel
Strand 4
A
106 109parallel
Strand 5
A
155 160parallel
Strand 6
A
198 205parallel
Strand 7
A
260 263parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
51 56parallel
Strand 3
B
27 31parallel
Strand 4
B
106 109parallel
Strand 5
B
155 160parallel
Strand 6
B
198 205parallel
Strand 7
B
260 263parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 80first strand
Strand 2
C
51 56parallel
Strand 3
C
27 31parallel
Strand 4
C
106 109parallel
Strand 5
C
155 160parallel
Strand 6
C
198 205parallel
Strand 7
C
260 263parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 80first strand
Strand 2
D
51 56parallel
Strand 3
D
27 30parallel
Strand 4
D
106 109parallel
Strand 5
D
155 160parallel
Strand 6
D
198 205parallel
Strand 7
D
260 263parallel
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