Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FFJ entry

There are 6 chains in PDB entry 5FFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 176	GLU 1570
D	T 1	T 22
C	T 2	G 23
B	LEU 178	GLN 1569
E	T 1	A 23
F	T 2	G 23

There are 99 helices in PDB entry 5FFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	179	196	Right-handed alpha
Helix 2	AA2	A	208	225	Right-handed alpha
Helix 3	AA3	A	236	251	Right-handed alpha
Helix 4	AA4	A	263	267	Right-handed 310
Helix 5	AA5	A	288	302	Right-handed alpha
Helix 6	AA6	A	318	328	Right-handed alpha
Helix 7	AA7	A	354	358	Right-handed 310
Helix 8	AA8	A	412	419	Right-handed alpha
Helix 9	AA9	A	721	739	Right-handed alpha
Helix 10	AB1	A	743	760	Right-handed alpha
Helix 11	AB2	A	765	788	Right-handed alpha
Helix 12	AB3	A	791	796	Right-handed alpha
Helix 13	AB4	A	796	811	Right-handed alpha
Helix 14	AB5	A	817	820	Right-handed 310
Helix 15	AB6	A	821	832	Right-handed alpha
Helix 16	AB7	A	840	857	Right-handed alpha
Helix 17	AB8	A	870	888	Right-handed alpha
Helix 18	AB9	A	908	924	Right-handed alpha
Helix 19	AC1	A	928	938	Right-handed alpha
Helix 20	AC2	A	946	962	Right-handed alpha
Helix 21	AC3	A	981	986	Right-handed alpha
Helix 22	AC4	A	997	1006	Right-handed alpha
Helix 23	AC5	A	1037	1047	Right-handed alpha
Helix 24	AC6	A	1057	1061	Right-handed 310
Helix 25	AC7	A	1062	1075	Right-handed alpha
Helix 26	AC8	A	1088	1091	Right-handed 310
Helix 27	AC9	A	1092	1094	Right-handed 310
Helix 28	AD1	A	1095	1106	Right-handed alpha
Helix 29	AD2	A	1122	1129	Right-handed alpha
Helix 30	AD3	A	1133	1137	Right-handed 310
Helix 31	AD4	A	1166	1177	Right-handed alpha
Helix 32	AD5	A	1203	1207	Right-handed 310
Helix 33	AD6	A	1229	1233	Right-handed alpha
Helix 34	AD7	A	1237	1261	Right-handed alpha
Helix 35	AD8	A	1269	1275	Right-handed 310
Helix 36	AD9	A	1285	1294	Right-handed alpha
Helix 37	AE1	A	1301	1303	Right-handed 310
Helix 38	AE2	A	1330	1335	Right-handed alpha
Helix 39	AE3	A	1367	1370	Right-handed 310
Helix 40	AE4	A	1397	1408	Right-handed alpha
Helix 41	AE5	A	1410	1417	Right-handed alpha
Helix 42	AE6	A	1417	1424	Right-handed alpha
Helix 43	AE7	A	1433	1450	Right-handed alpha
Helix 44	AE8	A	1497	1502	Right-handed 310
Helix 45	AE9	A	1510	1518	Right-handed alpha
Helix 46	AF1	A	1531	1535	Right-handed 310
Helix 47	AF2	A	1540	1563	Right-handed alpha
Helix 48	AF3	B	179	196	Right-handed alpha
Helix 49	AF4	B	208	224	Right-handed alpha
Helix 50	AF5	B	237	250	Right-handed alpha
Helix 51	AF6	B	263	267	Right-handed 310
Helix 52	AF7	B	288	302	Right-handed alpha
Helix 53	AF8	B	318	327	Right-handed alpha
Helix 54	AF9	B	340	343	Right-handed 310
Helix 55	AG1	B	357	361	Right-handed 310
Helix 56	AG2	B	412	419	Right-handed alpha
Helix 57	AG3	B	460	468	Right-handed alpha
Helix 58	AG4	B	496	514	Right-handed alpha
Helix 59	AG5	B	537	548	Right-handed alpha
Helix 60	AG6	B	586	596	Right-handed alpha
Helix 61	AG7	B	628	645	Right-handed alpha
Helix 62	AG8	B	647	655	Right-handed alpha
Helix 63	AG9	B	696	710	Right-handed alpha
Helix 64	AH1	B	716	718	Right-handed 310
Helix 65	AH2	B	719	738	Right-handed alpha
Helix 66	AH3	B	743	760	Right-handed alpha
Helix 67	AH4	B	765	787	Right-handed alpha
Helix 68	AH5	B	791	796	Right-handed alpha
Helix 69	AH6	B	796	812	Right-handed alpha
Helix 70	AH7	B	818	820	Right-handed 310
Helix 71	AH8	B	821	832	Right-handed alpha
Helix 72	AH9	B	839	852	Right-handed alpha
Helix 73	AI1	B	852	857	Right-handed alpha
Helix 74	AI2	B	870	890	Right-handed alpha
Helix 75	AI3	B	908	924	Right-handed alpha
Helix 76	AI4	B	928	938	Right-handed alpha
Helix 77	AI5	B	946	965	Right-handed alpha
Helix 78	AI6	B	981	986	Right-handed alpha
Helix 79	AI7	B	997	1009	Right-handed alpha
Helix 80	AI8	B	1037	1047	Right-handed alpha
Helix 81	AI9	B	1057	1061	Right-handed 310
Helix 82	AJ1	B	1062	1074	Right-handed alpha
Helix 83	AJ2	B	1088	1091	Right-handed 310
Helix 84	AJ3	B	1095	1106	Right-handed alpha
Helix 85	AJ4	B	1122	1129	Right-handed alpha
Helix 86	AJ5	B	1166	1178	Right-handed alpha
Helix 87	AJ6	B	1201	1207	Right-handed 310
Helix 88	AJ7	B	1229	1233	Right-handed alpha
Helix 89	AJ8	B	1237	1263	Right-handed alpha
Helix 90	AJ9	B	1270	1275	Right-handed 310
Helix 91	AK1	B	1285	1294	Right-handed alpha
Helix 92	AK2	B	1397	1408	Right-handed alpha
Helix 93	AK3	B	1410	1417	Right-handed alpha
Helix 94	AK4	B	1417	1424	Right-handed alpha
Helix 95	AK5	B	1433	1450	Right-handed alpha
Helix 96	AK6	B	1497	1502	Right-handed 310
Helix 97	AK7	B	1510	1518	Right-handed alpha
Helix 98	AK8	B	1531	1535	Right-handed 310
Helix 99	AK9	B	1540	1562	Right-handed alpha

There are 20 sheets in PDB entry 5FFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	308	314	parallel
Strand 3	A	228	234	parallel
Strand 4	A	334	338	parallel
Strand 5	A	370	374	parallel
Strand 6	A	198	202	parallel
Strand 7	A	407	409	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	979	first strand
Strand 2	A	940	944	parallel
Strand 3	A	900	902	parallel
Strand 4	A	1014	1017	parallel
Strand 5	A	1079	1086	parallel
Strand 6	A	1141	1148	anti-parallel
Strand 7	A	1108	1115	anti-parallel
Strand 8	A	1155	1160	parallel
Strand 9	A	1186	1188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1208	1209	first strand
Strand 2	A	1427	1428	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1223	first strand
Strand 2	A	1374	1378	anti-parallel
Strand 3	A	1344	1348	anti-parallel
Strand 4	A	1358	1361	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1234	1235	first strand
Strand 2	A	1314	1319	anti-parallel
Strand 3	A	1305	1311	anti-parallel
Strand 4	A	1364	1365	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1380	1381	first strand
Strand 2	A	1392	1393	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1461	1464	first strand
Strand 2	A	1491	1494	anti-parallel
Strand 3	A	1485	1486	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1504	1505	first strand
Strand 2	A	1508	1509	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1521	1522	first strand
Strand 2	A	1529	1530	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	308	314	parallel
Strand 3	B	228	234	parallel
Strand 4	B	332	338	parallel
Strand 5	B	367	373	parallel
Strand 6	B	198	203	parallel
Strand 7	B	406	411	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	394	395	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	609	610	parallel
Strand 3	B	577	580	parallel
Strand 4	B	490	493	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	979	first strand
Strand 2	B	940	944	parallel
Strand 3	B	899	902	parallel
Strand 4	B	1012	1017	parallel
Strand 5	B	1075	1086	parallel
Strand 6	B	1141	1147	anti-parallel
Strand 7	B	1108	1115	anti-parallel
Strand 8	B	1155	1160	parallel
Strand 9	B	1186	1188	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1208	1209	first strand
Strand 2	B	1427	1428	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1223	first strand
Strand 2	B	1375	1378	anti-parallel
Strand 3	B	1344	1347	anti-parallel
Strand 4	B	1358	1361	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1234	1235	first strand
Strand 2	B	1314	1319	anti-parallel
Strand 3	B	1305	1311	anti-parallel
Strand 4	B	1364	1365	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1380	1381	first strand
Strand 2	B	1392	1393	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1461	1464	first strand
Strand 2	B	1491	1494	anti-parallel
Strand 3	B	1484	1485	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1504	1505	first strand
Strand 2	B	1508	1509	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1521	1522	first strand
Strand 2	B	1529	1530	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFJ