Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FFM entry

There is 1 chain in PDB entry 5FFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 185GLY 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5FFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 220Right-handed alpha
Helix 2
AA2
A
229 240Right-handed alpha
Helix 3
AA3
A
267 275Right-handed alpha
Helix 4
AA4
A
295 311Right-handed alpha
Helix 5
AA5
A
354 359Right-handed alpha
Helix 6
AA6
A
369 383Right-handed alpha
Helix 7
AA7
A
454 463Right-handed alpha
Helix 8
AA8
A
490 500Right-handed alpha
Helix 9
AA9
A
504 508Right-handed 310
Helix 10
AB1
A
515 520Right-handed alpha
Helix 11
AB2
A
530 545Right-handed alpha
Helix 12
AB3
A
547 558Right-handed alpha
Helix 13
AB4
A
564 568Right-handed 310
Helix 14
AB5
A
571 575Right-handed 310
Helix 15
AB6
A
602 607Right-handed 310
Helix 16
AB7
A
608 621Right-handed alpha
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There are 4 sheets in PDB entry 5FFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
315 319parallel
Strand 3
A
285 289parallel
Strand 4
A
223 227parallel
Strand 5
A
262 266parallel
Strand 6
A
245 247parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
474 478parallel
Strand 3
A
426 429parallel
Strand 4
A
363 366parallel
Strand 5
A
409 412parallel
Strand 6
A
387 389parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 439first strand
Strand 2
A
444 452anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
593 595anti-parallel
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