Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FFN entry

There are 2 chains in PDB entry 5FFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 311
I
 LEU 21GLY 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5FFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
71 82Right-handed alpha
Helix 3
AA3
A
113 132Right-handed alpha
Helix 4
AA4
A
147 160Right-handed alpha
Helix 5
AA5
A
212 216Right-handed 310
Helix 6
AA6
A
249 268Right-handed alpha
Helix 7
AA7
A
272 287Right-handed alpha
Helix 8
AA8
I
25 29Right-handed 310
Helix 9
AA9
I
32 44Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5FFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
99 104parallel
Strand 4
A
29 35parallel
Strand 5
A
134 139parallel
Strand 6
A
163 167parallel
Strand 7
A
188 198parallel
Strand 8
A
201 204anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
99 104parallel
Strand 4
A
29 35parallel
Strand 5
A
134 139parallel
Strand 6
A
163 167parallel
Strand 7
A
188 198parallel
Strand 8
A
228 231parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
I
57 59anti-parallel
Strand 3
A
141 142anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
244 247anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
48 53first strand
Strand 2
I
66 71parallel
Strand 3
I
82 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il