Analysis of interatomic Contacts of Structural Units in PDB entry:
5FFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FFP entry

There are 2 chains in PDB entry 5FFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 155
B
 MSE 1SER 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5FFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 53Right-handed alpha
Helix 2
AA2
A
54 59Right-handed 310
Helix 3
AA3
A
64 70Right-handed alpha
Helix 4
AA4
A
71 84Right-handed alpha
Helix 5
AA5
A
86 90Right-handed 310
Helix 6
AA6
A
102 109Right-handed alpha
Helix 7
AA7
A
142 155Right-handed alpha
Helix 8
AA8
B
45 53Right-handed alpha
Helix 9
AA9
B
54 59Right-handed 310
Helix 10
AB1
B
64 70Right-handed alpha
Helix 11
AB2
B
71 84Right-handed alpha
Helix 12
AB3
B
86 90Right-handed 310
Helix 13
AB4
B
102 109Right-handed alpha
Helix 14
AB5
B
142 155Right-handed alpha
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There are 4 sheets in PDB entry 5FFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 15anti-parallel
Strand 3
A
26 33anti-parallel
Strand 4
A
36 44anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 117first strand
Strand 2
A
120 127anti-parallel
Strand 3
A
135 140anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
9 15anti-parallel
Strand 3
B
26 33anti-parallel
Strand 4
B
36 44anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 117first strand
Strand 2
B
120 127anti-parallel
Strand 3
B
135 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il