Analysis of interatomic Contacts of Structural Units in PDB entry:
5FGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FGN entry

There is 1 chain in PDB entry 5FGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8PRO 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5FGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
28 39Right-handed alpha
Helix 3
AA3
A
47 69Right-handed alpha
Helix 4
AA4
A
73 95Right-handed alpha
Helix 5
AA5
A
100 110Right-handed alpha
Helix 6
AA6
A
111 117Right-handed alpha
Helix 7
AA7
A
120 131Right-handed alpha
Helix 8
AA8
A
131 141Right-handed alpha
Helix 9
AA9
A
147 172Right-handed alpha
Helix 10
AB1
A
173 184Right-handed alpha
Helix 11
AB2
A
186 191Right-handed 310
Helix 12
AB3
A
193 209Right-handed alpha
Helix 13
AB4
A
243 251Right-handed 310
Helix 14
AB5
A
257 263Right-handed alpha
Helix 15
AB6
A
279 288Right-handed alpha
Helix 16
AB7
A
292 296Right-handed 310
Helix 17
AB8
A
297 303Right-handed alpha
Helix 18
AB9
A
306 314Right-handed alpha
Helix 19
AC1
A
340 343Right-handed 310
Helix 20
AC2
A
355 360Right-handed 310
Helix 21
AC3
A
361 367Right-handed alpha
Helix 22
AC4
A
386 390Right-handed 310
Helix 23
AC5
A
392 396Right-handed 310
Helix 24
AC6
A
411 436Right-handed alpha
Helix 25
AC7
A
459 461Right-handed 310
Helix 26
AC8
A
473 478Right-handed alpha
Helix 27
AC9
A
486 493Right-handed alpha
Helix 28
AD1
A
496 507Right-handed alpha
Helix 29
AD2
A
513 521Right-handed alpha
Helix 30
AD3
A
531 535Right-handed 310
Helix 31
AD4
A
537 541Right-handed 310
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There are 6 sheets in PDB entry 5FGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
142 143parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
524 525anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
481 485anti-parallel
Strand 3
A
443 450anti-parallel
Strand 4
A
231 238parallel
Strand 5
A
373 378parallel
Strand 6
A
317 322parallel
Strand 7
A
336 338parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
509 510parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
463 464anti-parallel
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